Variant report

Variant	rs295308
Chromosome Location	chr3:141342951-141342952
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:141337365..141343869-chr3:141344227..141348794,9	K562	blood:
2	chr3:141340456..141343869-chr3:141345751..141348044,4	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs16851513	0.98[AFR][1000 genomes]
rs16851589	0.89[YRI][hapmap]
rs2677428	1.00[EUR][1000 genomes]
rs295305	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs295306	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949709	chr3:141295050-142178144	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141313200-141344000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr3:141330400-141343200	Weak transcription	Brain Angular Gyrus	brain
3	chr3:141330400-141344000	Weak transcription	HMEC	breast
4	chr3:141330400-141344600	Weak transcription	NHLF	lung
5	chr3:141330600-141344200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr3:141330600-141344200	Weak transcription	Ovary	ovary
7	chr3:141330800-141344200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr3:141332000-141344600	Weak transcription	NHDF-Ad	bronchial
9	chr3:141332400-141344200	Weak transcription	HSMM	muscle
10	chr3:141332400-141344400	Weak transcription	Osteobl	bone
11	chr3:141332400-141345800	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr3:141333600-141344200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr3:141335200-141344200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr3:141335200-141344200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr3:141336000-141344200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr3:141336200-141343800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr3:141338400-141343800	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr3:141342200-141343200	Enhancers	Fetal Intestine Large	intestine
19	chr3:141342200-141343800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr3:141342600-141346000	Weak transcription	Fetal Intestine Small	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links