Variant report

Variant	rs16846337
Chromosome Location	chr3:143081975-143081976
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:143079326..143082089-chr3:143083976..143087226,3	K562	blood:
2	chr3:143081768..143084316-chr3:143087882..143089415,2	MCF-7	breast:
3	chr3:143075166..143076875-chr3:143081187..143082787,2	K562	blood:
4	chr3:143076644..143082089-chr3:143083976..143087336,5	K562	blood:
5	chr3:142839497..142841574-chr3:143081300..143083347,2	K562	blood:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10513206	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12631011	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12638374	1.00[CEU][hapmap]
rs1587588	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16853472	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16853475	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4839592	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61033065	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6767272	1.00[CEU][hapmap]
rs950427	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949288	chr3:142793323-143585882	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	esv2757894	chr3:142992697-143285979	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv2759184	chr3:142992697-143285979	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv877564	chr3:143059952-143116883	Strong transcription Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv877565	chr3:143078986-143116883	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:143068200-143091800	Weak transcription	Lung	lung
2	chr3:143068800-143082000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr3:143070200-143088600	Weak transcription	Aorta	Aorta
4	chr3:143071600-143102400	Weak transcription	Esophagus	oesophagus
5	chr3:143072000-143099400	Weak transcription	Ovary	ovary
6	chr3:143072400-143082200	Weak transcription	Primary B cells from cord blood	blood
7	chr3:143072400-143083000	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr3:143072400-143083000	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr3:143073400-143089600	Weak transcription	Psoas Muscle	Psoas
10	chr3:143077400-143104800	Weak transcription	Brain Hippocampus Middle	brain
11	chr3:143080600-143083000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
12	chr3:143080800-143082000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr3:143080800-143082200	Enhancers	NH-A	brain
14	chr3:143080800-143082800	Enhancers	Primary T helper naive cells from peripheral blood	blood
15	chr3:143080800-143083000	Enhancers	Primary T cells from cord blood	blood
16	chr3:143080800-143083000	Flanking Active TSS	Dnd41	blood
17	chr3:143080800-143083200	Enhancers	Primary T helper cells PMA-I stimulated	--
18	chr3:143080800-143083600	Enhancers	Primary hematopoietic stem cells short term culture	blood
19	chr3:143081000-143083200	Enhancers	Primary T helper cells fromperipheralblood	blood
20	chr3:143081200-143082200	Enhancers	Breast Myoepithelial Primary Cells	Breast
21	chr3:143081200-143082200	Enhancers	Primary T killer memory cells from peripheral blood	blood
22	chr3:143081200-143082400	Enhancers	Fetal Thymus	thymus
23	chr3:143081200-143082800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
24	chr3:143081200-143082800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr3:143081200-143083000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
26	chr3:143081200-143083400	Enhancers	Primary hematopoietic stem cells	blood
27	chr3:143081400-143082000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr3:143081400-143082000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
29	chr3:143081400-143082000	Enhancers	Stomach Mucosa	stomach
30	chr3:143081400-143082400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr3:143081600-143082000	Enhancers	Primary T cells fromperipheralblood	blood
32	chr3:143081600-143082000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr3:143081600-143082200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
34	chr3:143081600-143082400	Enhancers	Thymus	Thymus
35	chr3:143081600-143082400	Enhancers	HSMMtube	muscle
36	chr3:143081800-143082000	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr3:143081800-143082000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr3:143081800-143082000	Enhancers	K562	blood
39	chr3:143081800-143082400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr3:143081800-143083200	Enhancers	GM12878-XiMat	blood

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