Variant report

Variant	rs61033065
Chromosome Location	chr3:143080826-143080827
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:143079326..143082089-chr3:143083976..143087226,3	K562	blood:
2	chr3:143076644..143082089-chr3:143083976..143087336,5	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10513206	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12631011	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1587588	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16846337	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16853472	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16853475	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4839592	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs950427	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949288	chr3:142793323-143585882	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	esv2757894	chr3:142992697-143285979	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv2759184	chr3:142992697-143285979	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv877564	chr3:143059952-143116883	Strong transcription Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv877565	chr3:143078986-143116883	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:143068200-143091800	Weak transcription	Lung	lung
2	chr3:143068800-143082000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr3:143069000-143081600	Weak transcription	Primary T cells fromperipheralblood	blood
4	chr3:143069800-143081200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr3:143070200-143088600	Weak transcription	Aorta	Aorta
6	chr3:143071200-143081600	Weak transcription	Fetal Lung	lung
7	chr3:143071600-143102400	Weak transcription	Esophagus	oesophagus
8	chr3:143072000-143099400	Weak transcription	Ovary	ovary
9	chr3:143072200-143081200	Weak transcription	Adipose Nuclei	Adipose
10	chr3:143072400-143081200	Weak transcription	Fetal Thymus	thymus
11	chr3:143072400-143082200	Weak transcription	Primary B cells from cord blood	blood
12	chr3:143072400-143083000	Weak transcription	Primary monocytes fromperipheralblood	blood
13	chr3:143072400-143083000	Weak transcription	Monocytes-CD14+_RO01746	blood
14	chr3:143073400-143089600	Weak transcription	Psoas Muscle	Psoas
15	chr3:143077400-143104800	Weak transcription	Brain Hippocampus Middle	brain
16	chr3:143078200-143081400	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr3:143078400-143081200	Weak transcription	Brain Cingulate Gyrus	brain
18	chr3:143079000-143081400	Weak transcription	Stomach Mucosa	stomach
19	chr3:143079400-143081200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr3:143079400-143081600	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr3:143080000-143081600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr3:143080600-143081800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr3:143080600-143083000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
24	chr3:143080800-143081600	Enhancers	K562	blood
25	chr3:143080800-143081800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr3:143080800-143082000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr3:143080800-143082200	Enhancers	NH-A	brain
28	chr3:143080800-143082800	Enhancers	Primary T helper naive cells from peripheral blood	blood
29	chr3:143080800-143083000	Enhancers	Primary T cells from cord blood	blood
30	chr3:143080800-143083000	Flanking Active TSS	Dnd41	blood
31	chr3:143080800-143083200	Enhancers	Primary T helper cells PMA-I stimulated	--
32	chr3:143080800-143083600	Enhancers	Primary hematopoietic stem cells short term culture	blood

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