Variant report

Variant	rs16846504
Chromosome Location	chr2:142323048-142323049
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:142259500..142260427-chr2:142322823..142323400,2	MCF-7	breast:
2	chr2:142322809..142324424-chr2:142379273..142380846,2	MCF-7	breast:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1483150	1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1483151	0.92[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1483154	0.93[YRI][hapmap];0.84[AFR][1000 genomes]
rs16846250	0.80[YRI][hapmap]
rs16846311	0.80[YRI][hapmap];1.00[AMR][1000 genomes]
rs16846319	0.80[YRI][hapmap];1.00[AMR][1000 genomes]
rs16846333	1.00[AMR][1000 genomes]
rs16846369	0.86[YRI][hapmap]
rs16846372	0.80[YRI][hapmap]
rs16846475	1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16846480	1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16846515	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16846525	0.93[YRI][hapmap]
rs72976079	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72976082	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72976086	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72976087	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72978005	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72978011	0.89[AFR][1000 genomes]
rs72978012	0.89[AFR][1000 genomes]
rs72978013	0.89[AFR][1000 genomes]
rs72978026	0.84[AFR][1000 genomes]
rs72991023	1.00[AMR][1000 genomes]
rs72992746	1.00[AMR][1000 genomes]
rs72992758	1.00[AMR][1000 genomes]
rs72992762	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv583203	chr2:142055133-142378975	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv875240	chr2:142199421-142347455	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
3	nsv834393	chr2:142256714-142431564	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
4	nsv459640	chr2:142291211-142345574	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
5	nsv583213	chr2:142291211-142345574	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
6	nsv583214	chr2:142299923-142458316	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
7	nsv1011019	chr2:142314999-142430460	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:142315200-142327800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr2:142320400-142327800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr2:142322200-142323400	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr2:142322600-142323200	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr2:142322600-142323800	Enhancers	iPS-18 Cell Line	embryonic stem cell

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