Variant report

Variant	rs16846480
Chromosome Location	chr2:142318642-142318643
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:142317711..142321512-chr2:142324977..142327310,3	MCF-7	breast:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10496883	1.00[ASW][hapmap];0.81[LWK][hapmap]
rs1483150	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1483151	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1483154	0.92[YRI][hapmap]
rs16846227	1.00[ASW][hapmap];0.85[LWK][hapmap]
rs16846311	1.00[AMR][1000 genomes]
rs16846319	1.00[AMR][1000 genomes]
rs16846333	1.00[AMR][1000 genomes]
rs16846369	0.85[YRI][hapmap]
rs16846475	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16846504	1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16846515	1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16846525	0.92[YRI][hapmap]
rs72976078	0.81[AFR][1000 genomes]
rs72976079	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72976082	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72976086	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72976087	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72978005	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72991023	1.00[AMR][1000 genomes]
rs72992746	1.00[AMR][1000 genomes]
rs72992758	1.00[AMR][1000 genomes]
rs72992762	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv583203	chr2:142055133-142378975	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv875240	chr2:142199421-142347455	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
3	nsv834393	chr2:142256714-142431564	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
4	nsv459640	chr2:142291211-142345574	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
5	nsv583213	chr2:142291211-142345574	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
6	nsv583214	chr2:142299923-142458316	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
7	nsv1011019	chr2:142314999-142430460	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:142315200-142322600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr2:142315200-142327800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr2:142315400-142320000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr2:142318200-142322200	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr2:142318200-142322600	Weak transcription	HUES64 Cell Line	embryonic stem cell

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