Variant report

Variant	rs10496883
Chromosome Location	chr2:142246490-142246491
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10928107	1.00[CEU][hapmap];0.87[GIH][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10928108	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12466298	1.00[CEU][hapmap]
rs12691612	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs16846150	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16846186	1.00[CEU][hapmap];0.93[YRI][hapmap];0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16846227	1.00[ASW][hapmap];0.81[LWK][hapmap];0.92[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs16846233	1.00[AFR][1000 genomes]
rs16846250	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs16846257	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16846262	0.93[YRI][hapmap];0.95[AFR][1000 genomes]
rs16846311	1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs16846319	1.00[YRI][hapmap];0.98[AFR][1000 genomes]
rs16846333	1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs16846369	1.00[YRI][hapmap]
rs16846372	1.00[YRI][hapmap]
rs16846480	1.00[ASW][hapmap];0.81[LWK][hapmap]
rs17549958	1.00[EUR][1000 genomes]
rs17613427	1.00[CEU][hapmap]
rs17613455	1.00[CEU][hapmap]
rs17615422	1.00[EUR][1000 genomes]
rs3884569	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs4254452	1.00[CEU][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4261672	1.00[CEU][hapmap];0.87[GIH][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4277467	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4369801	1.00[EUR][1000 genomes]
rs4375803	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4387729	1.00[CEU][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4402694	1.00[CEU][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4429408	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4461205	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs4954911	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60388182	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61221994	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6429895	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6429897	1.00[EUR][1000 genomes]
rs72989025	0.88[AFR][1000 genomes]
rs72989033	0.88[AFR][1000 genomes]
rs72989056	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72989075	1.00[AFR][1000 genomes]
rs72989081	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72989098	1.00[AFR][1000 genomes]
rs72989102	1.00[AFR][1000 genomes]
rs72991023	0.98[AFR][1000 genomes]
rs72992746	0.83[AFR][1000 genomes]
rs72992758	0.93[AFR][1000 genomes]
rs72992762	0.89[AFR][1000 genomes]
rs7423788	0.92[YRI][hapmap];0.93[AFR][1000 genomes]
rs7571511	1.00[EUR][1000 genomes]
rs7578251	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817518	chr2:141714174-142287302	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv583203	chr2:142055133-142378975	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv875234	chr2:142156180-142254119	Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
4	nsv875240	chr2:142199421-142347455	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
5	nsv875243	chr2:142219033-142259592	Enhancers Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
6	nsv459607	chr2:142226768-142263400	Enhancers Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
7	nsv583207	chr2:142226768-142263400	Enhancers Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:142239400-142256400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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