Variant report
Variant | rs4402694 |
---|---|
Chromosome Location | chr2:142245271-142245272 |
allele | A/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10496883 | 1.00[CEU][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs10928107 | 1.00[CEU][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs10928108 | 0.82[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs12466298 | 1.00[CEU][hapmap] |
rs12691612 | 1.00[CEU][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs16846150 | 0.80[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs16846186 | 1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs16846257 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs17549958 | 1.00[EUR][1000 genomes] |
rs17613427 | 1.00[CEU][hapmap] |
rs17613455 | 1.00[CEU][hapmap] |
rs17615422 | 1.00[EUR][1000 genomes] |
rs3884569 | 1.00[CEU][hapmap];0.88[EUR][1000 genomes] |
rs4254452 | 1.00[CEU][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs4261672 | 1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs4277467 | 0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs4340449 | 0.81[YRI][hapmap] |
rs4369801 | 1.00[EUR][1000 genomes] |
rs4375803 | 1.00[CEU][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs4387729 | 1.00[CEU][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs4429408 | 1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs4461205 | 1.00[CEU][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs4599051 | 0.81[YRI][hapmap] |
rs4954911 | 0.82[CEU][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs60388182 | 0.85[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs61221994 | 0.85[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs6429895 | 0.91[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs6429897 | 0.80[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs72989056 | 0.85[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs72989081 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs7571511 | 0.80[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs7578251 | 1.00[CEU][hapmap] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv817518 | chr2:141714174-142287302 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
2 | nsv583203 | chr2:142055133-142378975 | Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
3 | esv2759095 | chr2:142071391-142245947 | Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
4 | nsv875234 | chr2:142156180-142254119 | Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats | Chromatin interactive region | 1 gene(s) | inside rSNPs | n/a |
5 | esv2756949 | chr2:142196123-142245947 | Weak transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | n/a |
6 | nsv875240 | chr2:142199421-142347455 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer | Chromatin interactive region | 2 gene(s) | inside rSNPs | n/a |
7 | nsv875243 | chr2:142219033-142259592 | Enhancers Weak transcription Genic enhancers | Chromatin interactive region | 1 gene(s) | inside rSNPs | n/a |
8 | nsv459607 | chr2:142226768-142263400 | Enhancers Weak transcription Genic enhancers | Chromatin interactive region | 1 gene(s) | inside rSNPs | n/a |
9 | nsv583207 | chr2:142226768-142263400 | Enhancers Weak transcription Genic enhancers | Chromatin interactive region | 1 gene(s) | inside rSNPs | n/a |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr2:142239400-142256400 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |