Variant report

Variant	rs7571511
Chromosome Location	chr2:142253124-142253125
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 87 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs10165979	0.84[AFR][1000 genomes]
rs10176397	0.84[AFR][1000 genomes]
rs10176693	0.88[AFR][1000 genomes]
rs10187180	0.98[AFR][1000 genomes]
rs10200529	0.86[AFR][1000 genomes]
rs10200578	0.88[AFR][1000 genomes]
rs10200845	0.84[AFR][1000 genomes]
rs10496883	1.00[EUR][1000 genomes]
rs10928107	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10928108	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11887261	0.98[AFR][1000 genomes]
rs11904458	0.81[AFR][1000 genomes]
rs12466189	0.98[AFR][1000 genomes]
rs12472734	0.84[AFR][1000 genomes]
rs12617980	0.88[AFR][1000 genomes]
rs12618575	0.88[AFR][1000 genomes]
rs12691612	1.00[EUR][1000 genomes]
rs12691613	0.88[AFR][1000 genomes]
rs12691615	0.84[AFR][1000 genomes]
rs1483138	0.84[AFR][1000 genomes]
rs1483152	0.88[AFR][1000 genomes]
rs16846150	0.96[EUR][1000 genomes]
rs16846186	0.96[EUR][1000 genomes]
rs16846257	1.00[EUR][1000 genomes]
rs17549958	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17615422	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2128694	0.84[AFR][1000 genomes]
rs2381110	0.84[AFR][1000 genomes]
rs2381111	0.84[AFR][1000 genomes]
rs2381112	0.84[AFR][1000 genomes]
rs2381113	0.84[AFR][1000 genomes]
rs2381192	0.81[AFR][1000 genomes]
rs3884569	0.88[EUR][1000 genomes]
rs4008531	0.84[AFR][1000 genomes]
rs4245859	0.88[AFR][1000 genomes]
rs4254452	1.00[EUR][1000 genomes]
rs4261672	0.96[EUR][1000 genomes]
rs4277467	0.96[EUR][1000 genomes]
rs4296372	1.00[AFR][1000 genomes]
rs4359580	0.88[AFR][1000 genomes]
rs4366842	1.00[AFR][1000 genomes]
rs4369801	1.00[EUR][1000 genomes]
rs4375803	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4387729	1.00[EUR][1000 genomes]
rs4396652	0.88[AFR][1000 genomes]
rs4402694	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4429408	0.96[EUR][1000 genomes]
rs4439901	0.94[AFR][1000 genomes]
rs4441406	0.98[AFR][1000 genomes]
rs4461205	1.00[EUR][1000 genomes]
rs4476294	1.00[AFR][1000 genomes]
rs4477847	0.88[AFR][1000 genomes]
rs4482418	0.86[AFR][1000 genomes]
rs4482419	0.84[AFR][1000 genomes]
rs4954911	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4954913	0.84[AFR][1000 genomes]
rs60388182	0.96[EUR][1000 genomes]
rs61221994	0.96[EUR][1000 genomes]
rs6429895	0.96[EUR][1000 genomes]
rs6429896	1.00[AFR][1000 genomes]
rs6429897	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6429901	0.84[AFR][1000 genomes]
rs6706356	0.84[AFR][1000 genomes]
rs6706377	0.84[AFR][1000 genomes]
rs6707441	0.86[AFR][1000 genomes]
rs6708438	0.84[AFR][1000 genomes]
rs6710020	0.84[AFR][1000 genomes]
rs6713043	1.00[AFR][1000 genomes]
rs6718844	1.00[AFR][1000 genomes]
rs6737585	0.88[AFR][1000 genomes]
rs6749472	0.90[AFR][1000 genomes]
rs72989056	0.96[EUR][1000 genomes]
rs72989081	1.00[EUR][1000 genomes]
rs7557631	0.84[AFR][1000 genomes]
rs7582623	0.84[AFR][1000 genomes]
rs983197	0.88[AFR][1000 genomes]
rs983198	0.88[AFR][1000 genomes]
rs983199	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817518	chr2:141714174-142287302	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv583203	chr2:142055133-142378975	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv875234	chr2:142156180-142254119	Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
4	nsv875240	chr2:142199421-142347455	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
5	nsv875243	chr2:142219033-142259592	Enhancers Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
6	nsv459607	chr2:142226768-142263400	Enhancers Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
7	nsv583207	chr2:142226768-142263400	Enhancers Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
8	nsv459618	chr2:142246988-142263746	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
9	nsv583209	chr2:142246988-142263746	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:142239400-142256400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr2:142247800-142266200	Weak transcription	Brain Anterior Caudate	brain
3	chr2:142249600-142254800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr2:142249600-142257600	Weak transcription	Brain Substantia Nigra	brain
5	chr2:142250000-142255000	Weak transcription	NH-A	brain
6	chr2:142250200-142254800	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr2:142252800-142255000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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