Variant report
| Variant | rs72989075 |
|---|---|
| Chromosome Location | chr2:142244407-142244408 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr2:142241833..142244486-chr2:142265674..142268047,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs10496883 | 1.00[AFR][1000 genomes] |
| rs16846150 | 0.88[AFR][1000 genomes] |
| rs16846186 | 0.93[AFR][1000 genomes] |
| rs16846227 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs16846233 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs16846250 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs16846257 | 1.00[AFR][1000 genomes] |
| rs16846262 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs16846311 | 0.93[AFR][1000 genomes] |
| rs16846319 | 0.98[AFR][1000 genomes] |
| rs16846333 | 0.93[AFR][1000 genomes] |
| rs60388182 | 0.88[AFR][1000 genomes] |
| rs61221994 | 0.88[AFR][1000 genomes] |
| rs72989025 | 0.88[AFR][1000 genomes] |
| rs72989033 | 0.88[AFR][1000 genomes] |
| rs72989056 | 0.88[AFR][1000 genomes] |
| rs72989081 | 1.00[AFR][1000 genomes] |
| rs72989098 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs72989102 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs72991023 | 0.98[AFR][1000 genomes] |
| rs72992746 | 0.83[AFR][1000 genomes] |
| rs72992758 | 0.93[AFR][1000 genomes] |
| rs72992762 | 0.89[AFR][1000 genomes] |
| rs7423788 | 0.93[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv817518 | chr2:141714174-142287302 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 2 | nsv583203 | chr2:142055133-142378975 | Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 3 | esv2759095 | chr2:142071391-142245947 | Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv875234 | chr2:142156180-142254119 | Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats | Chromatin interactive region | 1 gene(s) | inside rSNPs | n/a |
| 5 | esv2756949 | chr2:142196123-142245947 | Weak transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | n/a |
| 6 | nsv875240 | chr2:142199421-142347455 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer | Chromatin interactive region | 2 gene(s) | inside rSNPs | n/a |
| 7 | nsv875243 | chr2:142219033-142259592 | Enhancers Weak transcription Genic enhancers | Chromatin interactive region | 1 gene(s) | inside rSNPs | n/a |
| 8 | nsv459607 | chr2:142226768-142263400 | Enhancers Weak transcription Genic enhancers | Chromatin interactive region | 1 gene(s) | inside rSNPs | n/a |
| 9 | nsv583207 | chr2:142226768-142263400 | Enhancers Weak transcription Genic enhancers | Chromatin interactive region | 1 gene(s) | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:142239400-142256400 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
