Variant report

Variant	rs16846956
Chromosome Location	chr3:99608614-99608615
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs12330310	0.83[AFR][1000 genomes]
rs13315221	0.83[AFR][1000 genomes]
rs13323384	0.83[AFR][1000 genomes]
rs13327351	1.00[AFR][1000 genomes]
rs13353487	0.83[AFR][1000 genomes]
rs16841800	0.83[AFR][1000 genomes]
rs16841824	0.83[AFR][1000 genomes]
rs16841836	0.83[AFR][1000 genomes]
rs28368726	0.83[AFR][1000 genomes]
rs28463921	0.83[AFR][1000 genomes]
rs28508384	0.83[AFR][1000 genomes]
rs28816814	0.83[AFR][1000 genomes]
rs9809706	0.83[AFR][1000 genomes]
rs9810553	0.83[AFR][1000 genomes]
rs9816232	0.83[AFR][1000 genomes]
rs9820799	0.83[AFR][1000 genomes]
rs9824229	0.83[AFR][1000 genomes]
rs9825382	0.83[AFR][1000 genomes]
rs9825938	0.83[AFR][1000 genomes]
rs9828782	0.83[AFR][1000 genomes]
rs9830038	1.00[AFR][1000 genomes]
rs9831706	1.00[AFR][1000 genomes]
rs9833005	1.00[AFR][1000 genomes]
rs9835048	0.83[AFR][1000 genomes]
rs9837028	0.83[AFR][1000 genomes]
rs9837204	0.83[AFR][1000 genomes]
rs9837555	0.83[AFR][1000 genomes]
rs9841053	0.83[AFR][1000 genomes]
rs9841758	0.83[AFR][1000 genomes]
rs9843919	0.83[AFR][1000 genomes]
rs9844578	0.83[AFR][1000 genomes]
rs9844595	0.83[AFR][1000 genomes]
rs9849336	0.83[AFR][1000 genomes]
rs9849373	0.83[AFR][1000 genomes]
rs9851406	0.83[AFR][1000 genomes]
rs9851985	1.00[AFR][1000 genomes]
rs9852857	0.83[AFR][1000 genomes]
rs9860986	0.83[AFR][1000 genomes]
rs9862370	0.83[AFR][1000 genomes]
rs9868303	0.83[AFR][1000 genomes]
rs9871500	0.83[AFR][1000 genomes]
rs9875301	0.83[AFR][1000 genomes]
rs9883235	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817478	chr3:99474086-99955548	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv916476	chr3:99478229-100124625	Active TSS Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99595600-99612800	Weak transcription	Fetal Muscle Trunk	muscle
2	chr3:99596600-99614200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr3:99597200-99614200	Weak transcription	HMEC	breast
4	chr3:99600800-99638600	Weak transcription	Left Ventricle	heart
5	chr3:99603400-99609400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr3:99603600-99611200	Weak transcription	Psoas Muscle	Psoas
7	chr3:99604000-99612600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr3:99604000-99613200	Weak transcription	Primary hematopoietic stem cells	blood
9	chr3:99604000-99614400	Weak transcription	Primary T helper cells PMA-I stimulated	--
10	chr3:99604400-99609000	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr3:99604400-99614000	Weak transcription	HUVEC	blood vessel
12	chr3:99604600-99648200	Weak transcription	Primary T cells from cord blood	blood
13	chr3:99605000-99609200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr3:99605000-99609600	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr3:99605000-99613600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr3:99605000-99614600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr3:99605200-99608800	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr3:99605200-99613800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr3:99605400-99611000	Weak transcription	HepG2	liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links