Variant report

Variant	rs9833005
Chromosome Location	chr3:99515334-99515335
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs12330310	0.83[AFR][1000 genomes]
rs13315221	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs13323384	0.83[AFR][1000 genomes]
rs13327351	1.00[AFR][1000 genomes]
rs13353487	0.83[AFR][1000 genomes]
rs16841800	0.83[AFR][1000 genomes]
rs16841824	0.83[AFR][1000 genomes]
rs16841836	0.83[AFR][1000 genomes]
rs16846956	1.00[AFR][1000 genomes]
rs28368726	0.83[AFR][1000 genomes]
rs28463921	0.83[AFR][1000 genomes]
rs28508384	0.83[AFR][1000 genomes]
rs28816814	0.83[AFR][1000 genomes]
rs9809706	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs9810553	0.83[AFR][1000 genomes]
rs9816232	0.83[AFR][1000 genomes]
rs9820799	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs9824229	0.83[AFR][1000 genomes]
rs9825382	0.83[AFR][1000 genomes]
rs9825938	0.83[AFR][1000 genomes]
rs9828782	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs9830038	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs9831309	1.00[YRI][hapmap]
rs9831706	1.00[AFR][1000 genomes]
rs9835048	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs9837028	0.83[AFR][1000 genomes]
rs9837204	0.83[AFR][1000 genomes]
rs9837555	0.83[AFR][1000 genomes]
rs9841053	0.83[AFR][1000 genomes]
rs9841758	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs9843919	0.83[AFR][1000 genomes]
rs9844578	0.83[AFR][1000 genomes]
rs9844595	0.83[AFR][1000 genomes]
rs9849336	0.83[AFR][1000 genomes]
rs9849373	0.83[AFR][1000 genomes]
rs9851406	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs9851985	1.00[AFR][1000 genomes]
rs9852857	0.83[AFR][1000 genomes]
rs9860986	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs9862370	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs9868303	0.83[AFR][1000 genomes]
rs9870153	1.00[YRI][hapmap]
rs9871500	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs9875301	0.83[AFR][1000 genomes]
rs9883235	1.00[YRI][hapmap];0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817478	chr3:99474086-99955548	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv916476	chr3:99478229-100124625	Active TSS Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99492000-99517600	Weak transcription	Stomach Smooth Muscle	stomach
2	chr3:99502600-99518200	Weak transcription	HSMMtube	muscle
3	chr3:99502800-99518400	Weak transcription	NH-A	brain
4	chr3:99508400-99522200	Weak transcription	NHDF-Ad	bronchial
5	chr3:99508800-99518600	Strong transcription	Osteobl	bone
6	chr3:99510000-99523600	Weak transcription	HUVEC	blood vessel
7	chr3:99510400-99516200	Weak transcription	NHLF	lung
8	chr3:99510600-99515600	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr3:99511800-99522800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr3:99512800-99515400	Weak transcription	Right Ventricle	heart
11	chr3:99513000-99515800	Strong transcription	Muscle Satellite Cultured Cells	--
12	chr3:99513000-99518400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr3:99513200-99515800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr3:99514200-99523600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr3:99514600-99516400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr3:99514600-99516400	Weak transcription	NHEK	skin
17	chr3:99514600-99516800	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr3:99514800-99523600	Weak transcription	Aorta	Aorta
19	chr3:99515000-99516600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr3:99515000-99520800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr3:99515200-99519800	Weak transcription	HSMM	muscle

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