Variant report

Variant	rs16847102
Chromosome Location	chr2:212722988-212722989
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12470608	0.85[CHB][hapmap];0.91[CHD][hapmap]
rs16846940	1.00[CEU][hapmap];0.86[CHB][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs16847003	0.86[CHB][hapmap]
rs16847131	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[YRI][hapmap];0.88[EUR][1000 genomes]
rs2371344	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62184493	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6435678	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];0.88[YRI][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7600511	0.92[CEU][hapmap];0.87[YRI][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34128	chr2:212581485-212857122	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv875784	chr2:212639948-212761152	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv875785	chr2:212683946-212752193	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
4	nsv834525	chr2:212693190-212860356	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv875786	chr2:212715410-212752193	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
6	nsv875787	chr2:212722988-212752193	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
7	nsv875788	chr2:212722988-212752193	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
8	nsv875789	chr2:212722988-212761152	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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