Variant report

Variant	rs16847131
Chromosome Location	chr2:212732582-212732583
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12470608	0.85[CHB][hapmap]
rs16846940	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs16847003	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs16847102	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[YRI][hapmap]
rs2371344	0.85[EUR][1000 genomes]
rs62184493	0.85[EUR][1000 genomes]
rs6435678	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.87[EUR][1000 genomes]
rs7600511	0.92[CEU][hapmap];0.86[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34128	chr2:212581485-212857122	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv875784	chr2:212639948-212761152	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv875785	chr2:212683946-212752193	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
4	nsv834525	chr2:212693190-212860356	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv875786	chr2:212715410-212752193	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
6	nsv875787	chr2:212722988-212752193	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
7	nsv875788	chr2:212722988-212752193	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
8	nsv875789	chr2:212722988-212761152	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
9	nsv875790	chr2:212731514-212752193	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
10	nsv584323	chr2:212731514-212783175	Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:212732200-212734200	Enhancers	HUVEC	blood vessel
2	chr2:212732400-212733000	Enhancers	Osteobl	bone
3	chr2:212732400-212733400	Enhancers	Muscle Satellite Cultured Cells	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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