Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11886035	0.90[AFR][1000 genomes]
rs11902414	0.88[AFR][1000 genomes]
rs11903314	0.91[AMR][1000 genomes]
rs16847741	0.82[AMR][1000 genomes]
rs16847746	0.91[AMR][1000 genomes]
rs16847747	0.82[AMR][1000 genomes]
rs16847783	1.00[CEU][hapmap];0.95[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58834228	0.82[AMR][1000 genomes]
rs60076681	0.82[AMR][1000 genomes]
rs6435693	0.95[YRI][hapmap];0.98[AFR][1000 genomes]
rs6435694	0.94[AFR][1000 genomes]
rs6723461	0.81[AMR][1000 genomes]
rs6732730	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6738053	0.92[AFR][1000 genomes]
rs6746409	1.00[CEU][hapmap]
rs7559605	1.00[CEU][hapmap];0.95[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7560757	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7573642	1.00[CEU][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7579746	0.95[YRI][hapmap];0.95[AFR][1000 genomes]
rs7589512	1.00[CEU][hapmap]
rs7608211	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011572	chr2:212840066-213152279	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv875802	chr2:212867291-213004603	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv875805	chr2:212891401-213164837	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv875806	chr2:212997024-213211067	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:213001400-213003000	Weak transcription	Fetal Intestine Small	intestine
2	chr2:213001400-213003600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr2:213001400-213009400	Weak transcription	Fetal Heart	heart
4	chr2:213001600-213003000	Weak transcription	Fetal Intestine Large	intestine

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