Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:213008616..213011501-chr2:213014184..213015998,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11886035	0.92[AFR][1000 genomes]
rs11902414	0.91[AFR][1000 genomes]
rs11903314	0.91[AMR][1000 genomes]
rs16847741	0.82[AMR][1000 genomes]
rs16847746	0.91[AMR][1000 genomes]
rs16847747	0.82[AMR][1000 genomes]
rs16847775	1.00[CEU][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16847783	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58834228	0.82[AMR][1000 genomes]
rs60076681	0.82[AMR][1000 genomes]
rs6435693	1.00[AFR][1000 genomes]
rs6435694	0.96[AFR][1000 genomes]
rs6723461	0.81[AMR][1000 genomes]
rs6732730	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6738053	0.94[AFR][1000 genomes]
rs6746409	1.00[CEU][hapmap]
rs7559605	1.00[CEU][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7560757	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7579746	0.98[AFR][1000 genomes]
rs7589512	1.00[CEU][hapmap]
rs7608211	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011572	chr2:212840066-213152279	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv875805	chr2:212891401-213164837	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv875806	chr2:212997024-213211067	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:213009200-213011000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr2:213009400-213010600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr2:213009400-213011000	Enhancers	Fetal Heart	heart
4	chr2:213009400-213011000	Enhancers	Osteobl	bone
5	chr2:213009600-213010400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr2:213009600-213010400	Weak transcription	Fetal Intestine Small	intestine
7	chr2:213009600-213010600	Enhancers	Muscle Satellite Cultured Cells	--
8	chr2:213010000-213010400	Weak transcription	Fetal Intestine Large	intestine
9	chr2:213010200-213010600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr2:213010200-213010800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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