Variant report

Variant	rs1684949
Chromosome Location	chr1:76616286-76616287
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs6593525	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1488	chr1:76587622-76632635	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:76576600-76620000	Weak transcription	Primary B cells from cord blood	blood
2	chr1:76599800-76620200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr1:76606200-76620000	Weak transcription	Spleen	Spleen
4	chr1:76608000-76620200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr1:76608200-76620200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr1:76608200-76620200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr1:76608600-76616400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr1:76609800-76616800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr1:76610000-76616400	Weak transcription	Right Atrium	heart
10	chr1:76611000-76620000	Weak transcription	Fetal Lung	lung
11	chr1:76613000-76616600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr1:76613200-76617400	Enhancers	Brain Substantia Nigra	brain
13	chr1:76613400-76616800	Enhancers	Brain Anterior Caudate	brain
14	chr1:76614400-76617000	Enhancers	Brain Cingulate Gyrus	brain
15	chr1:76615200-76617000	Enhancers	Brain Hippocampus Middle	brain
16	chr1:76615400-76616400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr1:76615400-76616600	Enhancers	Brain Angular Gyrus	brain
18	chr1:76615600-76617200	Enhancers	Adipose Nuclei	Adipose
19	chr1:76615600-76617600	Enhancers	Left Ventricle	heart
20	chr1:76615800-76616800	Enhancers	Brain Inferior Temporal Lobe	brain
21	chr1:76616000-76616600	Enhancers	HUES6 Cell Line	embryonic stem cell
22	chr1:76616000-76616800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
23	chr1:76616200-76616600	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr1:76616200-76616800	Enhancers	Esophagus	oesophagus

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