Variant report

Variant	rs6593525
Chromosome Location	chr1:76727007-76727008
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1684949	1.00[MEX][hapmap]
rs17098502	1.00[CEU][hapmap]
rs56003674	1.00[EUR][1000 genomes]
rs72675952	1.00[EUR][1000 genomes]
rs72675953	1.00[EUR][1000 genomes]
rs72675954	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870621	chr1:76620313-76997071	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1499	chr1:76704981-76749688	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv534168	chr1:76718950-77039352	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:76719600-76727200	Weak transcription	Aorta	Aorta
2	chr1:76719600-76727600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
3	chr1:76720000-76727600	Enhancers	Primary T helper naive cells from peripheral blood	blood
4	chr1:76720200-76727800	Enhancers	Primary T helper cells PMA-I stimulated	--
5	chr1:76720200-76728000	Enhancers	Primary T helper cells fromperipheralblood	blood
6	chr1:76722000-76732800	Weak transcription	Fetal Kidney	kidney
7	chr1:76722800-76727800	Enhancers	Primary T cells from cord blood	blood
8	chr1:76723800-76729200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr1:76723800-76734000	Weak transcription	Brain Anterior Caudate	brain
10	chr1:76724200-76729000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr1:76724200-76733400	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr1:76725600-76727200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
13	chr1:76725600-76727400	Enhancers	Fetal Thymus	thymus
14	chr1:76725800-76728600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr1:76726000-76727600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr1:76726000-76732200	Weak transcription	Primary T cells fromperipheralblood	blood
17	chr1:76726400-76732200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
18	chr1:76726400-76732400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr1:76726400-76733000	Weak transcription	Primary hematopoietic stem cells	blood
20	chr1:76726400-76734200	Weak transcription	Thymus	Thymus
21	chr1:76726400-76740000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr1:76726600-76732000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
23	chr1:76726600-76732200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
24	chr1:76726800-76733400	Weak transcription	Primary B cells from cord blood	blood

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