Variant report

Variant	rs72675954
Chromosome Location	chr1:76723843-76723844
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs56003674	1.00[EUR][1000 genomes]
rs6593525	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72675952	1.00[EUR][1000 genomes]
rs72675953	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870621	chr1:76620313-76997071	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1001452	chr1:76692057-76724652	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1499	chr1:76704981-76749688	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv534168	chr1:76718950-77039352	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:76719600-76727200	Weak transcription	Aorta	Aorta
2	chr1:76719600-76727600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
3	chr1:76719800-76724000	Weak transcription	Adipose Nuclei	Adipose
4	chr1:76720000-76724400	Enhancers	Fetal Thymus	thymus
5	chr1:76720000-76726200	Weak transcription	Brain Cingulate Gyrus	brain
6	chr1:76720000-76727600	Enhancers	Primary T helper naive cells from peripheral blood	blood
7	chr1:76720200-76727800	Enhancers	Primary T helper cells PMA-I stimulated	--
8	chr1:76720200-76728000	Enhancers	Primary T helper cells fromperipheralblood	blood
9	chr1:76720600-76725800	Weak transcription	Primary hematopoietic stem cells	blood
10	chr1:76720800-76725800	Weak transcription	Primary monocytes fromperipheralblood	blood
11	chr1:76721000-76726000	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr1:76721600-76725800	Weak transcription	Primary neutrophils fromperipheralblood	blood
13	chr1:76722000-76732800	Weak transcription	Fetal Kidney	kidney
14	chr1:76722400-76725800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr1:76722600-76725600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
16	chr1:76722600-76726000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr1:76722800-76724000	Weak transcription	Fetal Lung	lung
18	chr1:76722800-76725600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
19	chr1:76722800-76725800	Weak transcription	HUVEC	blood vessel
20	chr1:76722800-76727800	Enhancers	Primary T cells from cord blood	blood
21	chr1:76723000-76724200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr1:76723000-76724200	Enhancers	HUES64 Cell Line	embryonic stem cell
23	chr1:76723000-76725600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
24	chr1:76723000-76725800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr1:76723200-76724000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr1:76723200-76724000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr1:76723200-76724200	Enhancers	ES-I3 Cell Line	embryonic stem cell
28	chr1:76723200-76725400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
29	chr1:76723400-76725600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
30	chr1:76723600-76725800	Weak transcription	Thymus	Thymus
31	chr1:76723800-76724800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr1:76723800-76725600	Weak transcription	Primary T cells fromperipheralblood	blood
33	chr1:76723800-76726000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr1:76723800-76729200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
35	chr1:76723800-76734000	Weak transcription	Brain Anterior Caudate	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links