Variant report

Variant	rs16849683
Chromosome Location	chr1:224755584-224755585
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10449245	0.81[AMR][1000 genomes]
rs11802812	1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap]
rs13376387	1.00[CHB][hapmap]
rs16849654	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs58182294	1.00[ASN][1000 genomes]
rs61186459	1.00[ASN][1000 genomes]
rs6693360	1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap]
rs7539939	1.00[JPT][hapmap]
rs7550112	1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014717	chr1:224551939-224885543	Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv535311	chr1:224551939-224885543	Strong transcription Genic enhancers Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	nsv873224	chr1:224746577-224794913	Flanking Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:224740000-224762200	Weak transcription	Ovary	ovary
2	chr1:224753600-224756600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr1:224753600-224780400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr1:224753800-224758000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr1:224753800-224759400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr1:224754000-224756200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr1:224754000-224762000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr1:224754000-224767000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr1:224754000-224767200	Weak transcription	NHDF-Ad	bronchial
10	chr1:224755200-224755600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr1:224755200-224755600	Enhancers	Skeletal Muscle Male	skeletal muscle
12	chr1:224755400-224755600	Enhancers	HSMMtube	muscle

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links