Variant report

Variant	rs16850352
Chromosome Location	chr4:74865074-74865075
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MYC	chr4:74863508-74865118	A549	lung:	n/a	chr4:74864175-74864184

Variant related genes	Relation type
CXCL5	TF binding region

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs16850354	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs183028	1.00[JPT][hapmap]
rs187080	1.00[JPT][hapmap]
rs191601	1.00[JPT][hapmap]
rs2437285	1.00[JPT][hapmap]
rs2457996	1.00[JPT][hapmap]
rs2564594	1.00[JPT][hapmap]
rs352009	1.00[JPT][hapmap]
rs352045	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs352047	1.00[JPT][hapmap]
rs3756075	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs377579	1.00[JPT][hapmap]
rs394408	1.00[JPT][hapmap]
rs409336	1.00[JPT][hapmap]
rs425535	1.00[JPT][hapmap]
rs426901	1.00[JPT][hapmap]
rs440676	1.00[JPT][hapmap]
rs450373	1.00[JPT][hapmap]
rs552582	1.00[JPT][hapmap]
rs6838264	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7697666	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525980	chr4:74731526-75382209	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv1004768	chr4:74774372-75109579	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	nsv1006218	chr4:74782324-75105424	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	nsv1006029	chr4:74793922-74986664	Weak transcription Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:74864000-74870000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:74864600-74865200	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
3	chr4:74864600-74866000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr4:74864600-74870000	Weak transcription	HMEC	breast
5	chr4:74864600-74876600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr4:74864800-74865200	Flanking Active TSS	A549	lung
7	chr4:74864800-74866400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr4:74864800-74866400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr4:74864800-74870200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr4:74865000-74865200	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
11	chr4:74865000-74865200	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
12	chr4:74865000-74871200	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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