Variant report

Variant	rs191601
Chromosome Location	chr4:74850705-74850706
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr4:74850491-74850720	HUVEC	blood vessel:	n/a	n/a
2	ATF2	chr4:74850685-74851457	H1-hESC	embryonic stem cell:	n/a	n/a
3	ATF2	chr4:74850603-74851635	H1-hESC	embryonic stem cell:	n/a	n/a
4	FOS	chr4:74850517-74851012	MCF10A-Er-Src	breast:	n/a	n/a
5	FOS	chr4:74850479-74850992	MCF10A-Er-Src	breast:	n/a	n/a
6	STAT3	chr4:74850536-74851079	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:74846051..74848273-chr4:74849481..74852190,2	K562	blood:
2	chr4:74849171..74851572-chr4:74855795..74857358,2	K562	blood:

Variant related genes	Relation type
PF4	TF binding region
ENSG00000163737	Chromatin interaction

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs1025596	0.81[EUR][1000 genomes]
rs1156553	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs1156554	1.00[CEU][hapmap]
rs13117734	0.83[EUR][1000 genomes]
rs1594229	0.83[EUR][1000 genomes]
rs1594230	0.83[EUR][1000 genomes]
rs164615	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs164617	0.83[EUR][1000 genomes]
rs168449	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs168450	0.83[EUR][1000 genomes]
rs16850352	1.00[JPT][hapmap]
rs16850354	1.00[JPT][hapmap]
rs1821623	0.83[EUR][1000 genomes]
rs183028	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1836663	0.83[EUR][1000 genomes]
rs187080	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap];0.96[AFR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs187082	0.90[CEU][hapmap];0.81[EUR][1000 genomes]
rs189511	0.83[EUR][1000 genomes]
rs1898002	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs193263	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2043537	0.83[EUR][1000 genomes]
rs2117721	0.83[EUR][1000 genomes]
rs240610	0.83[EUR][1000 genomes]
rs2437285	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2457996	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2472655	0.83[EUR][1000 genomes]
rs2564594	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.87[AFR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs351997	0.83[EUR][1000 genomes]
rs352007	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs352009	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs352010	1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs352013	0.83[EUR][1000 genomes]
rs352018	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs352023	0.83[EUR][1000 genomes]
rs352024	0.83[EUR][1000 genomes]
rs352026	0.83[EUR][1000 genomes]
rs352027	0.83[EUR][1000 genomes]
rs352045	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.87[EUR][1000 genomes]
rs352046	0.86[EUR][1000 genomes]
rs352047	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.87[EUR][1000 genomes]
rs3756075	1.00[JPT][hapmap]
rs377579	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs394408	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs409336	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs416046	0.89[CEU][hapmap];0.84[EUR][1000 genomes]
rs420389	0.90[CEU][hapmap];1.00[CHB][hapmap];0.87[YRI][hapmap];0.87[AFR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs425535	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes]
rs426901	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs434988	0.83[EUR][1000 genomes]
rs440676	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.87[AFR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs442155	0.90[CEU][hapmap];0.96[EUR][1000 genomes]
rs447206	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs450373	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.87[AFR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4694656	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs487834	0.83[EUR][1000 genomes]
rs552582	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs599746	0.83[EUR][1000 genomes]
rs614822	0.83[EUR][1000 genomes]
rs6820253	0.83[EUR][1000 genomes]
rs6838264	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001725	chr4:74354050-74860924	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv525980	chr4:74731526-75382209	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv1004768	chr4:74774372-75109579	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	nsv1006218	chr4:74782324-75105424	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
5	nsv1006029	chr4:74793922-74986664	Weak transcription Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:74837000-74850800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr4:74845400-74853400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr4:74845600-74853000	Weak transcription	K562	blood
4	chr4:74847800-74852000	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr4:74848200-74852800	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr4:74848200-74853600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr4:74848400-74853400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr4:74848600-74852000	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr4:74848600-74853600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr4:74848600-74863000	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr4:74849600-74851400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr4:74849800-74850800	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr4:74850000-74850800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr4:74850000-74851200	Enhancers	Muscle Satellite Cultured Cells	--
15	chr4:74850000-74852000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
16	chr4:74850400-74851000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr4:74850400-74862800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chr4:74850600-74850800	Enhancers	H9 Cell Line	embryonic stem cell
19	chr4:74850600-74851000	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
20	chr4:74850600-74851000	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
21	chr4:74850600-74851000	Enhancers	NHDF-Ad	bronchial
22	chr4:74850600-74852000	Enhancers	iPS-15b Cell Line	embryonic stem cell

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