Variant report

Variant	rs1821623
Chromosome Location	chr4:74804846-74804847
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:74803360..74804892-chr4:74805516..74807150,2	K562	blood:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs1025596	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1156553	1.00[EUR][1000 genomes]
rs1156554	0.90[EUR][1000 genomes]
rs13117734	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1594229	1.00[EUR][1000 genomes]
rs1594230	1.00[EUR][1000 genomes]
rs164615	1.00[EUR][1000 genomes]
rs164617	1.00[EUR][1000 genomes]
rs168449	0.83[EUR][1000 genomes]
rs168450	1.00[EUR][1000 genomes]
rs183028	0.83[EUR][1000 genomes]
rs1836663	1.00[EUR][1000 genomes]
rs189511	1.00[EUR][1000 genomes]
rs1898002	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs191601	0.83[EUR][1000 genomes]
rs193263	0.83[EUR][1000 genomes]
rs2043537	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2117721	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs240610	1.00[EUR][1000 genomes]
rs2457996	0.83[EUR][1000 genomes]
rs2472655	1.00[EUR][1000 genomes]
rs351997	1.00[EUR][1000 genomes]
rs352007	0.84[EUR][1000 genomes]
rs352009	0.83[EUR][1000 genomes]
rs352013	1.00[EUR][1000 genomes]
rs352018	1.00[EUR][1000 genomes]
rs352023	1.00[EUR][1000 genomes]
rs352024	1.00[EUR][1000 genomes]
rs352026	1.00[EUR][1000 genomes]
rs352027	1.00[EUR][1000 genomes]
rs352029	0.89[EUR][1000 genomes]
rs377579	0.83[EUR][1000 genomes]
rs394408	0.83[EUR][1000 genomes]
rs416176	0.95[EUR][1000 genomes]
rs434988	1.00[EUR][1000 genomes]
rs442155	0.82[EUR][1000 genomes]
rs447206	0.85[EUR][1000 genomes]
rs4694656	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs487834	1.00[EUR][1000 genomes]
rs552582	0.82[EUR][1000 genomes]
rs599746	1.00[EUR][1000 genomes]
rs614822	1.00[EUR][1000 genomes]
rs6820253	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001725	chr4:74354050-74860924	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv530126	chr4:74376622-74843892	Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv525980	chr4:74731526-75382209	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
4	nsv1004768	chr4:74774372-75109579	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
5	nsv1006218	chr4:74782324-75105424	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
6	nsv1006029	chr4:74793922-74986664	Weak transcription Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
7	esv1010272	chr4:74802868-74813081	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv964067	chr4:74803401-74807121	Enhancers Weak transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:74803800-74809000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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