Variant report

Variant	rs352029
Chromosome Location	chr4:74791795-74791796
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs1025596	0.86[EUR][1000 genomes]
rs1156553	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes]
rs1156554	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13117734	0.89[EUR][1000 genomes]
rs1594229	0.89[EUR][1000 genomes]
rs1594230	0.89[EUR][1000 genomes]
rs164615	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes]
rs164617	0.89[EUR][1000 genomes]
rs168450	0.89[EUR][1000 genomes]
rs1821623	0.89[EUR][1000 genomes]
rs183028	1.00[CEU][hapmap]
rs1836663	0.89[EUR][1000 genomes]
rs187080	0.91[CEU][hapmap]
rs187082	0.81[CEU][hapmap];1.00[CHB][hapmap]
rs189511	0.89[EUR][1000 genomes]
rs1898002	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes]
rs191601	1.00[CEU][hapmap]
rs2043537	0.89[EUR][1000 genomes]
rs2117721	0.89[EUR][1000 genomes]
rs240610	0.89[EUR][1000 genomes]
rs2437285	0.91[CEU][hapmap]
rs2457996	1.00[CEU][hapmap]
rs2472655	0.89[EUR][1000 genomes]
rs2564594	0.91[CEU][hapmap]
rs351997	0.89[EUR][1000 genomes]
rs352009	1.00[CEU][hapmap]
rs352010	1.00[CHB][hapmap]
rs352013	0.89[EUR][1000 genomes]
rs352018	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes]
rs352023	0.89[EUR][1000 genomes]
rs352024	0.89[EUR][1000 genomes]
rs352026	0.89[EUR][1000 genomes]
rs352027	0.99[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs352045	0.81[CEU][hapmap]
rs377579	1.00[CEU][hapmap]
rs394408	1.00[CEU][hapmap]
rs409336	0.91[CEU][hapmap]
rs416046	0.90[CEU][hapmap]
rs416176	0.84[EUR][1000 genomes]
rs420389	0.90[CEU][hapmap]
rs425535	0.81[CEU][hapmap]
rs426901	0.89[CEU][hapmap]
rs434988	0.89[EUR][1000 genomes]
rs440676	0.90[CEU][hapmap]
rs442155	0.91[CEU][hapmap];1.00[CHB][hapmap]
rs447206	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs450373	0.91[CEU][hapmap]
rs4694656	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes]
rs487834	0.99[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs552582	1.00[CEU][hapmap]
rs599746	0.89[EUR][1000 genomes]
rs614822	0.89[EUR][1000 genomes]
rs6820253	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001725	chr4:74354050-74860924	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv530126	chr4:74376622-74843892	Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv525980	chr4:74731526-75382209	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
4	nsv1004768	chr4:74774372-75109579	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
5	nsv1006218	chr4:74782324-75105424	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
6	nsv966525	chr4:74786364-74795947	Weak transcription Enhancers Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:74786000-74793800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr4:74789200-74794200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr4:74789200-74794600	Weak transcription	NHEK	skin
4	chr4:74791600-74793600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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