Variant report

Variant	rs16850508
Chromosome Location	chr2:235052133-235052134
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10198984	1.00[EUR][1000 genomes]
rs11563130	1.00[MEX][hapmap]
rs16850525	0.87[AMR][1000 genomes]
rs73996589	0.87[AMR][1000 genomes]
rs73996596	0.87[AMR][1000 genomes]
rs7559652	1.00[EUR][1000 genomes]
rs7606683	1.00[EUR][1000 genomes]
rs7606835	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013712	chr2:234558457-235495825	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv532476	chr2:234595695-235134381	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	nsv834571	chr2:234929288-235110332	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv998149	chr2:234978261-235086951	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:235044800-235054000	Weak transcription	NHDF-Ad	bronchial
2	chr2:235046800-235055000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
3	chr2:235046800-235055000	Weak transcription	Primary T helper cells PMA-I stimulated	--
4	chr2:235048000-235055200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr2:235050200-235054400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr2:235050600-235055000	Weak transcription	Dnd41	blood
7	chr2:235051000-235052200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr2:235051200-235055000	Weak transcription	HMEC	breast
9	chr2:235051200-235055200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr2:235051600-235054000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr2:235051600-235055000	Weak transcription	NHEK	skin
12	chr2:235051800-235055200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr2:235052000-235052600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr2:235052000-235055000	Weak transcription	A549	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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