Variant report

Variant	rs16850525
Chromosome Location	chr2:235055333-235055334
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11563130	1.00[MEX][hapmap]
rs16850508	0.87[AMR][1000 genomes]
rs57644671	0.85[AMR][1000 genomes]
rs73996589	1.00[AMR][1000 genomes]
rs73996596	1.00[AMR][1000 genomes]
rs73999215	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013712	chr2:234558457-235495825	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv532476	chr2:234595695-235134381	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	nsv834571	chr2:234929288-235110332	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv998149	chr2:234978261-235086951	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:235052600-235055800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr2:235053600-235056800	Enhancers	Fetal Kidney	kidney
3	chr2:235053800-235056200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr2:235054000-235056200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr2:235054000-235056200	Enhancers	NHDF-Ad	bronchial
6	chr2:235054400-235056000	Weak transcription	Fetal Intestine Small	intestine
7	chr2:235054400-235056400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr2:235054400-235057600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr2:235054600-235056400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr2:235055000-235055400	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr2:235055000-235055400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
12	chr2:235055000-235055600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr2:235055000-235055600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr2:235055000-235055600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
15	chr2:235055000-235055600	Enhancers	NHLF	lung
16	chr2:235055000-235055800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr2:235055000-235055800	Enhancers	Dnd41	blood
18	chr2:235055000-235056000	Enhancers	Primary T cells from cord blood	blood
19	chr2:235055000-235056000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
20	chr2:235055000-235056000	Enhancers	Primary T helper naive cells from peripheral blood	blood
21	chr2:235055000-235056000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
22	chr2:235055000-235056000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
23	chr2:235055000-235056000	Enhancers	Primary T helper cells PMA-I stimulated	--
24	chr2:235055000-235056000	Enhancers	Primary T killer memory cells from peripheral blood	blood
25	chr2:235055000-235056200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
26	chr2:235055000-235056200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr2:235055000-235056400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr2:235055000-235056600	Enhancers	NH-A	brain
29	chr2:235055000-235057000	Enhancers	A549	lung
30	chr2:235055000-235057000	Enhancers	HMEC	breast
31	chr2:235055000-235057400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
32	chr2:235055000-235057800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
33	chr2:235055000-235057800	Enhancers	Fetal Thymus	thymus
34	chr2:235055000-235057800	Enhancers	NHEK	skin
35	chr2:235055000-235059000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
36	chr2:235055000-235059200	Enhancers	Primary T helper cells fromperipheralblood	blood
37	chr2:235055000-235059400	Enhancers	Primary T cells fromperipheralblood	blood
38	chr2:235055000-235059600	Enhancers	Breast Myoepithelial Primary Cells	Breast
39	chr2:235055200-235055400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
40	chr2:235055200-235055400	Enhancers	Sigmoid Colon	Sigmoid Colon
41	chr2:235055200-235055400	Enhancers	Small Intestine	intestine
42	chr2:235055200-235055400	Enhancers	Spleen	Spleen
43	chr2:235055200-235055600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr2:235055200-235055600	Enhancers	Adipose Nuclei	Adipose
45	chr2:235055200-235055600	Enhancers	HSMM	muscle
46	chr2:235055200-235055600	Flanking Active TSS	HUVEC	blood vessel
47	chr2:235055200-235055600	Enhancers	Osteobl	bone
48	chr2:235055200-235056000	Enhancers	Lung	lung
49	chr2:235055200-235056400	Enhancers	HSMMtube	muscle
50	chr2:235055200-235057000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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