Variant report

Variant	rs16850633
Chromosome Location	chr3:140315715-140315716
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:140314929..140317518-chr3:140320988..140323953,2	K562	blood:
2	chr3:140313745..140316717-chr3:140320885..140322798,2	K562	blood:

Extended variants
information (count: 66 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs1070437	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1070466	0.83[EUR][1000 genomes]
rs1441874	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1441876	0.83[EUR][1000 genomes]
rs1466847	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1494522	0.83[EUR][1000 genomes]
rs1494523	0.83[EUR][1000 genomes]
rs1494524	0.83[EUR][1000 genomes]
rs1494525	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1494527	0.83[EUR][1000 genomes]
rs1494528	0.83[EUR][1000 genomes]
rs1499874	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1499875	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1499876	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1540506	1.00[CEU][hapmap];0.91[TSI][hapmap]
rs1690852	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1690853	0.83[EUR][1000 genomes]
rs1690856	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1690857	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1690863	0.83[EUR][1000 genomes]
rs1690864	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1690865	0.83[EUR][1000 genomes]
rs1690879	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.87[EUR][1000 genomes]
rs1696194	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1696196	0.83[EUR][1000 genomes]
rs1696197	0.83[EUR][1000 genomes]
rs1696199	0.83[EUR][1000 genomes]
rs1696201	0.83[EUR][1000 genomes]
rs1696219	0.87[EUR][1000 genomes]
rs1706546	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1837862	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2165580	0.83[EUR][1000 genomes]
rs2583808	0.83[EUR][1000 genomes]
rs347967	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs55895318	0.98[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs696577	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs696578	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs698657	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs698660	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs698662	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs698663	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs698664	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs698665	0.83[EUR][1000 genomes]
rs698666	1.00[CEU][hapmap];0.91[CHB][hapmap];0.82[CHD][hapmap];0.90[GIH][hapmap];0.95[JPT][hapmap];0.91[TSI][hapmap];0.87[EUR][1000 genomes]
rs698668	0.87[EUR][1000 genomes]
rs698669	0.85[CEU][hapmap]
rs698670	0.87[EUR][1000 genomes]
rs698671	0.86[EUR][1000 genomes]
rs698672	1.00[CEU][hapmap];0.95[CHB][hapmap];0.88[CHD][hapmap];0.90[GIH][hapmap];0.95[JPT][hapmap];0.93[TSI][hapmap];0.87[EUR][1000 genomes]
rs698675	1.00[CEU][hapmap];0.90[GIH][hapmap];0.93[TSI][hapmap];0.86[EUR][1000 genomes]
rs698676	0.87[EUR][1000 genomes]
rs698677	1.00[CEU][hapmap];0.90[GIH][hapmap];0.93[TSI][hapmap];0.87[EUR][1000 genomes]
rs702278	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs836929	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs837661	0.83[EUR][1000 genomes]
rs863903	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs967669	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs967670	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9843100	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757891	chr3:139925764-140524730	Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	esv2759181	chr3:139925764-140524730	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv527831	chr3:139932966-140533823	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	esv34489	chr3:140009020-140469302	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	esv2757012	chr3:140009220-140460228	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv870185	chr3:140265153-140395673	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv877546	chr3:140299603-140468370	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs16850633	MRAS	cis	parietal	SCAN

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:140306000-140318200	Weak transcription	HSMM	muscle
2	chr3:140310600-140320800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr3:140310600-140325400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr3:140313600-140316000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr3:140313600-140316600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr3:140315000-140316000	Enhancers	Ovary	ovary
7	chr3:140315200-140316600	Enhancers	Right Atrium	heart
8	chr3:140315200-140317200	Enhancers	Left Ventricle	heart
9	chr3:140315400-140316400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr3:140315600-140317000	Enhancers	HSMMtube	muscle

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