Variant report
Variant | rs698675 |
---|---|
Chromosome Location | chr3:140405654-140405655 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:4 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr3:140399760..140401307-chr3:140404568..140407227,2 | MCF-7 | breast: | |
2 | chr3:140402179..140404321-chr3:140405178..140407110,2 | K562 | blood: | |
3 | chr3:140404247..140407194-chr3:140408344..140410912,4 | K562 | blood: | |
4 | chr3:140398849..140401533-chr3:140405253..140408358,3 | K562 | blood: |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs1070466 | 0.81[EUR][1000 genomes] |
rs10804677 | 0.89[EUR][1000 genomes] |
rs10935392 | 0.88[EUR][1000 genomes] |
rs10935394 | 0.81[EUR][1000 genomes] |
rs10935395 | 0.82[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs11717160 | 0.89[EUR][1000 genomes] |
rs1441874 | 0.89[EUR][1000 genomes] |
rs1441876 | 0.80[EUR][1000 genomes] |
rs1466847 | 0.88[EUR][1000 genomes] |
rs1494522 | 0.80[EUR][1000 genomes] |
rs1494523 | 0.80[EUR][1000 genomes] |
rs1494525 | 0.90[EUR][1000 genomes] |
rs1494527 | 0.80[EUR][1000 genomes] |
rs1494528 | 0.80[EUR][1000 genomes] |
rs1499874 | 0.88[EUR][1000 genomes] |
rs1499875 | 0.88[EUR][1000 genomes] |
rs1499876 | 0.88[EUR][1000 genomes] |
rs1540506 | 1.00[CEU][hapmap];0.80[MEX][hapmap];0.98[TSI][hapmap];0.89[EUR][1000 genomes] |
rs16850633 | 0.86[EUR][1000 genomes] |
rs1690852 | 0.81[EUR][1000 genomes] |
rs1690856 | 0.90[EUR][1000 genomes] |
rs1690857 | 0.90[EUR][1000 genomes] |
rs1690863 | 0.81[EUR][1000 genomes] |
rs1690864 | 0.89[EUR][1000 genomes] |
rs1690865 | 0.80[EUR][1000 genomes] |
rs1690879 | 1.00[CEU][hapmap];0.83[CHB][hapmap];0.83[JPT][hapmap];0.89[YRI][hapmap];0.82[AFR][1000 genomes];0.99[EUR][1000 genomes];0.80[ASN][1000 genomes] |
rs1696194 | 0.90[EUR][1000 genomes] |
rs1696196 | 0.80[EUR][1000 genomes] |
rs1696197 | 0.80[EUR][1000 genomes] |
rs1696199 | 0.80[EUR][1000 genomes] |
rs1696201 | 0.80[EUR][1000 genomes] |
rs1696219 | 0.85[AFR][1000 genomes];0.99[EUR][1000 genomes];0.80[ASN][1000 genomes] |
rs1706546 | 0.90[EUR][1000 genomes] |
rs1837862 | 0.89[EUR][1000 genomes] |
rs2583808 | 0.80[EUR][1000 genomes] |
rs34014522 | 0.84[EUR][1000 genomes] |
rs347967 | 0.86[EUR][1000 genomes] |
rs4683518 | 0.80[EUR][1000 genomes] |
rs55895318 | 0.90[EUR][1000 genomes] |
rs696577 | 0.87[EUR][1000 genomes] |
rs696578 | 0.86[EUR][1000 genomes] |
rs698657 | 0.88[EUR][1000 genomes] |
rs698660 | 0.88[EUR][1000 genomes] |
rs698662 | 0.90[EUR][1000 genomes] |
rs698663 | 0.91[EUR][1000 genomes] |
rs698664 | 0.91[EUR][1000 genomes] |
rs698665 | 0.81[EUR][1000 genomes] |
rs698666 | 0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.83[JPT][hapmap];0.88[LWK][hapmap];0.95[MKK][hapmap];0.98[TSI][hapmap];0.84[YRI][hapmap];0.85[AFR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs698668 | 0.85[AFR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs698669 | 0.85[CEU][hapmap];0.81[GIH][hapmap];0.95[MKK][hapmap];0.86[TSI][hapmap];0.87[EUR][1000 genomes] |
rs698670 | 0.85[AFR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs698671 | 0.85[AFR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs698672 | 0.82[ASW][hapmap];1.00[CEU][hapmap];0.83[CHB][hapmap];0.83[CHD][hapmap];1.00[GIH][hapmap];0.83[JPT][hapmap];0.88[LWK][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.85[AFR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs698676 | 0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs698677 | 0.88[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs702278 | 0.90[EUR][1000 genomes] |
rs836929 | 1.00[CEU][hapmap];0.83[JPT][hapmap];0.90[EUR][1000 genomes] |
rs837661 | 0.82[EUR][1000 genomes] |
rs863903 | 0.88[EUR][1000 genomes] |
rs967669 | 0.90[EUR][1000 genomes] |
rs967670 | 0.90[EUR][1000 genomes] |
rs9843100 | 0.89[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | esv2757891 | chr3:139925764-140524730 | Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
2 | esv2759181 | chr3:139925764-140524730 | Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
3 | nsv527831 | chr3:139932966-140533823 | Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
4 | esv34489 | chr3:140009020-140469302 | Enhancers Weak transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
5 | esv2757012 | chr3:140009220-140460228 | Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
6 | nsv877546 | chr3:140299603-140468370 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
7 | nsv997694 | chr3:140324012-140464786 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
8 | nsv1008123 | chr3:140328825-140464786 | Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
9 | nsv460869 | chr3:140330108-140450655 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
10 | nsv591864 | chr3:140330108-140450655 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
11 | nsv818170 | chr3:140330108-140454836 | Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
12 | nsv1008838 | chr3:140355975-140588726 | Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Weak transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
13 | nsv877547 | chr3:140366948-140575287 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
14 | nsv829743 | chr3:140384246-140559778 | Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
15 | nsv591865 | chr3:140396022-140728850 | Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 11 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr3:140402000-140424400 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |