Variant report

Variant	rs16851423
Chromosome Location	chr3:141145046-141145047
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:141144979..141148149-chr3:141151413..141154524,4	K562	blood:
2	chr3:141120069..141122089-chr3:141143062..141145117,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000177311	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12054156	0.83[AMR][1000 genomes]
rs12633093	0.94[AMR][1000 genomes]
rs16851419	0.86[AMR][1000 genomes]
rs721338	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73872725	0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829744	chr3:141016749-141189168	Genic enhancers Strong transcription Transcr. at gene 5' and 3' Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141131600-141145200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr3:141131800-141161200	Weak transcription	Thymus	Thymus
3	chr3:141132200-141171000	Weak transcription	Primary B cells from cord blood	blood
4	chr3:141133800-141158400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr3:141133800-141158400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr3:141134000-141146800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr3:141134000-141161600	Weak transcription	Fetal Brain Male	brain
8	chr3:141134200-141145200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr3:141134200-141161600	Weak transcription	Primary T cells from cord blood	blood
10	chr3:141134600-141148000	Weak transcription	Brain Germinal Matrix	brain
11	chr3:141135600-141160200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
12	chr3:141137600-141146400	Weak transcription	Fetal Muscle Trunk	muscle
13	chr3:141138000-141152000	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr3:141138400-141145200	Weak transcription	Monocytes-CD14+_RO01746	blood
15	chr3:141140800-141159200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr3:141141000-141145400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr3:141141400-141145200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr3:141141400-141145600	Weak transcription	Small Intestine	intestine
19	chr3:141141400-141146200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr3:141141400-141146400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr3:141141400-141154800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
22	chr3:141141600-141146200	Weak transcription	Hela-S3	cervix
23	chr3:141142400-141145200	Genic enhancers	GM12878-XiMat	blood
24	chr3:141143000-141145600	Weak transcription	Primary B cells from peripheral blood	blood
25	chr3:141143000-141150800	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr3:141143400-141151600	Enhancers	Fetal Heart	heart
27	chr3:141143600-141147200	Enhancers	Breast Myoepithelial Primary Cells	Breast
28	chr3:141143800-141145200	Enhancers	Brain Substantia Nigra	brain
29	chr3:141143800-141145600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr3:141143800-141145600	Enhancers	Colon Smooth Muscle	Colon
31	chr3:141143800-141145800	Genic enhancers	HepG2	liver
32	chr3:141143800-141146600	Enhancers	NH-A	brain
33	chr3:141143800-141146800	Genic enhancers	Primary T cells fromperipheralblood	blood
34	chr3:141143800-141147000	Enhancers	Psoas Muscle	Psoas
35	chr3:141143800-141147200	Enhancers	Brain Angular Gyrus	brain
36	chr3:141143800-141147200	Genic enhancers	A549	lung
37	chr3:141143800-141147200	Genic enhancers	NHDF-Ad	bronchial
38	chr3:141143800-141147400	Genic enhancers	Osteobl	bone
39	chr3:141143800-141148000	Enhancers	Skeletal Muscle Female	skeletal muscle
40	chr3:141144000-141146000	Enhancers	Pancreatic Islets	Pancreatic Islet
41	chr3:141144000-141146000	Enhancers	HMEC	breast
42	chr3:141144000-141146400	Enhancers	Fetal Kidney	kidney
43	chr3:141144000-141146600	Enhancers	Muscle Satellite Cultured Cells	--
44	chr3:141144000-141147200	Enhancers	Brain Inferior Temporal Lobe	brain
45	chr3:141144200-141145200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
46	chr3:141144200-141145200	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr3:141144200-141145200	Enhancers	Left Ventricle	heart
48	chr3:141144200-141146400	Enhancers	Brain Hippocampus Middle	brain
49	chr3:141144200-141146400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
50	chr3:141144200-141146600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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