Variant report

Variant	rs721338
Chromosome Location	chr3:141150954-141150955
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11919595	0.81[GIH][hapmap]
rs12633093	1.00[GIH][hapmap];1.00[MEX][hapmap];0.84[AMR][1000 genomes]
rs16846258	1.00[CEU][hapmap]
rs16851419	0.84[YRI][hapmap];0.87[AMR][1000 genomes]
rs16851423	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3732872	1.00[CEU][hapmap]
rs6769161	1.00[CEU][hapmap]
rs73872725	0.89[AMR][1000 genomes]
rs7624941	1.00[CEU][hapmap]
rs7649666	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829744	chr3:141016749-141189168	Genic enhancers Strong transcription Transcr. at gene 5' and 3' Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141131800-141161200	Weak transcription	Thymus	Thymus
2	chr3:141132200-141171000	Weak transcription	Primary B cells from cord blood	blood
3	chr3:141133800-141158400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr3:141133800-141158400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr3:141134000-141161600	Weak transcription	Fetal Brain Male	brain
6	chr3:141134200-141161600	Weak transcription	Primary T cells from cord blood	blood
7	chr3:141135600-141160200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr3:141138000-141152000	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr3:141140800-141159200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr3:141141400-141154800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr3:141143400-141151600	Enhancers	Fetal Heart	heart
12	chr3:141145000-141154800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr3:141145000-141160000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr3:141145200-141151200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr3:141145400-141152600	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr3:141145400-141161200	Weak transcription	Fetal Brain Female	brain
17	chr3:141145400-141161800	Weak transcription	Esophagus	oesophagus
18	chr3:141145600-141151200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr3:141145600-141151800	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr3:141145800-141151400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr3:141145800-141155800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
22	chr3:141145800-141161600	Weak transcription	Primary neutrophils fromperipheralblood	blood
23	chr3:141146000-141151200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr3:141146000-141151800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr3:141146000-141160000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr3:141146000-141160000	Weak transcription	Primary monocytes fromperipheralblood	blood
27	chr3:141146000-141160000	Weak transcription	Primary hematopoietic stem cells	blood
28	chr3:141146200-141160000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr3:141146400-141151400	Strong transcription	Rectal Mucosa Donor 31	rectum
30	chr3:141146400-141153000	Weak transcription	Small Intestine	intestine
31	chr3:141146400-141155000	Weak transcription	Colonic Mucosa	Colon
32	chr3:141146600-141157600	Weak transcription	HSMMtube	muscle
33	chr3:141146600-141160000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr3:141147000-141151200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr3:141147000-141161200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr3:141147000-141161200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr3:141147200-141153200	Weak transcription	Ovary	ovary
38	chr3:141147400-141151600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr3:141147400-141154800	Strong transcription	Fetal Intestine Large	intestine
40	chr3:141147400-141160000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
41	chr3:141147800-141158400	Weak transcription	Primary T helper cells PMA-I stimulated	--
42	chr3:141148000-141153000	Genic enhancers	A549	lung
43	chr3:141148600-141160000	Weak transcription	HUES6 Cell Line	embryonic stem cell
44	chr3:141148800-141151600	Active TSS	Duodenum Smooth Muscle	Duodenum
45	chr3:141148800-141152600	Strong transcription	GM12878-XiMat	blood
46	chr3:141148800-141157200	Weak transcription	Primary B cells from peripheral blood	blood
47	chr3:141148800-141160000	Weak transcription	NHEK	skin
48	chr3:141148800-141161600	Weak transcription	Brain Germinal Matrix	brain
49	chr3:141148800-141161600	Weak transcription	Spleen	Spleen
50	chr3:141148800-141161800	Weak transcription	Cortex derived primary cultured neurospheres	brain

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