Variant report

Variant	rs6769161
Chromosome Location	chr3:141176931-141176932
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11557453	1.00[JPT][hapmap]
rs11714208	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs11717144	1.00[JPT][hapmap]
rs12695740	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs12695741	1.00[JPT][hapmap]
rs13095168	1.00[JPT][hapmap]
rs13099945	1.00[JPT][hapmap]
rs16846258	1.00[CEU][hapmap]
rs3732872	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs59828782	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6800247	0.90[YRI][hapmap]
rs720663	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs721338	1.00[CEU][hapmap]
rs73869613	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7624941	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs7649666	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs9289629	1.00[JPT][hapmap]
rs9289634	1.00[JPT][hapmap]
rs9808953	1.00[JPT][hapmap]
rs9822575	1.00[JPT][hapmap]
rs9830055	1.00[JPT][hapmap]
rs9833121	1.00[JPT][hapmap]
rs9836050	1.00[JPT][hapmap]
rs9850416	1.00[JPT][hapmap]
rs9851256	0.81[ASN][1000 genomes]
rs9865971	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs9868956	1.00[JPT][hapmap]
rs9870749	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829744	chr3:141016749-141189168	Genic enhancers Strong transcription Transcr. at gene 5' and 3' Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141166600-141181600	Weak transcription	Pancreas	Pancrea
2	chr3:141166800-141179200	Weak transcription	Fetal Brain Male	brain
3	chr3:141168400-141179200	Weak transcription	Fetal Heart	heart
4	chr3:141168600-141181800	Weak transcription	Aorta	Aorta
5	chr3:141169000-141179000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr3:141171400-141179200	Weak transcription	Small Intestine	intestine
7	chr3:141171600-141179000	Weak transcription	Brain Anterior Caudate	brain
8	chr3:141173800-141177000	Enhancers	Fetal Intestine Large	intestine
9	chr3:141174200-141179000	Weak transcription	Primary B cells from peripheral blood	blood
10	chr3:141174200-141179000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr3:141174200-141179200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr3:141174200-141181000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr3:141174200-141182200	Weak transcription	Brain Hippocampus Middle	brain
14	chr3:141174200-141182400	Weak transcription	Brain Cingulate Gyrus	brain
15	chr3:141174200-141182400	Weak transcription	Brain Substantia Nigra	brain
16	chr3:141174400-141177600	Enhancers	K562	blood
17	chr3:141174600-141178400	Enhancers	HepG2	liver
18	chr3:141174800-141178800	Weak transcription	NH-A	brain
19	chr3:141174800-141180800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr3:141175000-141178000	Enhancers	NHLF	lung
21	chr3:141175400-141177000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr3:141175400-141177200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr3:141175400-141177200	Enhancers	Fetal Intestine Small	intestine
24	chr3:141175400-141178000	Weak transcription	Gastric	stomach
25	chr3:141175600-141177000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr3:141175600-141177000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr3:141175600-141177800	Weak transcription	Rectal Mucosa Donor 31	rectum
28	chr3:141175800-141177000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr3:141175800-141177000	Enhancers	NHDF-Ad	bronchial
30	chr3:141176000-141177000	Enhancers	Skeletal Muscle Male	skeletal muscle
31	chr3:141176000-141177000	Enhancers	Osteobl	bone
32	chr3:141176200-141177200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr3:141176400-141177000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr3:141176400-141177000	Enhancers	Muscle Satellite Cultured Cells	--
35	chr3:141176400-141177000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
36	chr3:141176600-141177000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr3:141176600-141177000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr3:141176600-141177000	Enhancers	Skeletal Muscle Female	skeletal muscle
39	chr3:141176600-141177000	Enhancers	A549	lung
40	chr3:141176600-141177000	Enhancers	HSMM	muscle
41	chr3:141176600-141177200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr3:141176800-141183600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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