Variant report

Variant	rs7649666
Chromosome Location	chr3:141185517-141185518
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:141185426..141187026-chr3:141189753..141191362,2	K562	blood:
2	chr3:141087119..141089705-chr3:141184052..141185654,2	K562	blood:
3	chr3:141183744..141185593-chr3:141204841..141207517,2	MCF-7	breast:
4	chr3:141184151..141186428-chr3:141194623..141197205,2	MCF-7	breast:
5	chr3:141173783..141176363-chr3:141184238..141186556,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000177311	Chromatin interaction
ENSG00000155903	Chromatin interaction
ENSG00000215606	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs11557453	1.00[JPT][hapmap]
rs11714208	1.00[JPT][hapmap]
rs11717144	1.00[JPT][hapmap]
rs12695740	1.00[JPT][hapmap]
rs12695741	1.00[JPT][hapmap]
rs13095168	1.00[JPT][hapmap]
rs13099945	1.00[JPT][hapmap]
rs16846258	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34317570	0.91[ASN][1000 genomes]
rs3732872	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs59828782	0.85[ASN][1000 genomes]
rs60720666	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60759545	0.87[ASN][1000 genomes]
rs6769161	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs720663	1.00[JPT][hapmap]
rs721338	1.00[CEU][hapmap]
rs73869619	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73869620	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73869622	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73869630	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7615579	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7616978	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7617073	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7624941	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7651511	0.84[ASN][1000 genomes]
rs9289629	1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs9289634	1.00[JPT][hapmap]
rs9808953	1.00[JPT][hapmap]
rs9822575	0.82[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs9830055	1.00[JPT][hapmap]
rs9833121	1.00[JPT][hapmap]
rs9836050	1.00[JPT][hapmap]
rs9850416	0.82[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs9865971	1.00[JPT][hapmap]
rs9868956	1.00[JPT][hapmap]
rs9870749	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829744	chr3:141016749-141189168	Genic enhancers Strong transcription Transcr. at gene 5' and 3' Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv965217	chr3:141184266-141190303	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141177000-141189600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr3:141178000-141188200	Weak transcription	NHDF-Ad	bronchial
3	chr3:141184400-141188200	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr3:141184400-141188800	Weak transcription	NH-A	brain
5	chr3:141184400-141189600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr3:141184600-141188200	Weak transcription	Osteobl	bone
7	chr3:141184600-141189600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr3:141184600-141189800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr3:141184600-141201000	Weak transcription	NHLF	lung
10	chr3:141185200-141186000	Enhancers	K562	blood

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