Variant report

Variant	rs73869620
Chromosome Location	chr3:141179876-141179877
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:141179088..141181324-chr3:141593928..141596334,2	K562	blood:
2	chr3:141177832..141180375-chr3:141204869..141206491,3	K562	blood:
3	chr3:141177718..141181324-chr3:141593928..141596478,3	K562	blood:
4	chr3:141179479..141182374-chr3:141204762..141206399,2	MCF-7	breast:
5	chr3:141178968..141180548-chr3:141278934..141280564,2	K562	blood:

Variant related genes	Relation type
ENSG00000069849	Chromatin interaction
ENSG00000155903	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs16846258	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34317570	0.89[ASN][1000 genomes]
rs3732872	0.90[EUR][1000 genomes]
rs59828782	0.87[ASN][1000 genomes]
rs60720666	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60759545	0.89[ASN][1000 genomes]
rs73869619	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73869622	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73869630	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7615579	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7616978	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7617073	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7624941	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7649666	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7651511	0.82[ASN][1000 genomes]
rs9289629	0.96[ASN][1000 genomes]
rs9822575	0.83[ASN][1000 genomes]
rs9850416	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829744	chr3:141016749-141189168	Genic enhancers Strong transcription Transcr. at gene 5' and 3' Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141166600-141181600	Weak transcription	Pancreas	Pancrea
2	chr3:141168600-141181800	Weak transcription	Aorta	Aorta
3	chr3:141174200-141181000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr3:141174200-141182200	Weak transcription	Brain Hippocampus Middle	brain
5	chr3:141174200-141182400	Weak transcription	Brain Cingulate Gyrus	brain
6	chr3:141174200-141182400	Weak transcription	Brain Substantia Nigra	brain
7	chr3:141174800-141180800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr3:141176800-141183600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr3:141177000-141183800	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr3:141177000-141184000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr3:141177000-141189600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr3:141178000-141184200	Weak transcription	NHLF	lung
13	chr3:141178000-141188200	Weak transcription	NHDF-Ad	bronchial
14	chr3:141178400-141181000	Weak transcription	HepG2	liver
15	chr3:141179000-141180200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
16	chr3:141179400-141180800	Weak transcription	Primary B cells from peripheral blood	blood
17	chr3:141179400-141181000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
18	chr3:141179400-141183800	Weak transcription	NH-A	brain
19	chr3:141179600-141181000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr3:141179600-141182400	Weak transcription	A549	lung
21	chr3:141179600-141183800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr3:141179600-141184000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr3:141179600-141184000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr3:141179600-141184000	Weak transcription	Osteobl	bone

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