Variant report

Variant	rs7615579
Chromosome Location	chr3:141182304-141182305
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs16846258	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34317570	0.91[ASN][1000 genomes]
rs3732872	0.90[EUR][1000 genomes]
rs59828782	0.85[ASN][1000 genomes]
rs60720666	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60759545	0.87[ASN][1000 genomes]
rs73869619	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73869620	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73869622	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73869630	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7616978	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7617073	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7624941	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7649666	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7651511	0.84[ASN][1000 genomes]
rs9289629	0.93[ASN][1000 genomes]
rs9822575	0.85[ASN][1000 genomes]
rs9850416	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829744	chr3:141016749-141189168	Genic enhancers Strong transcription Transcr. at gene 5' and 3' Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141174200-141182400	Weak transcription	Brain Cingulate Gyrus	brain
2	chr3:141174200-141182400	Weak transcription	Brain Substantia Nigra	brain
3	chr3:141176800-141183600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr3:141177000-141183800	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr3:141177000-141184000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr3:141177000-141189600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr3:141178000-141184200	Weak transcription	NHLF	lung
8	chr3:141178000-141188200	Weak transcription	NHDF-Ad	bronchial
9	chr3:141179400-141183800	Weak transcription	NH-A	brain
10	chr3:141179600-141182400	Weak transcription	A549	lung
11	chr3:141179600-141183800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr3:141179600-141184000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr3:141179600-141184000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr3:141179600-141184000	Weak transcription	Osteobl	bone
15	chr3:141180800-141182400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr3:141181400-141184400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr3:141181600-141182600	Enhancers	Pancreas	Pancrea
18	chr3:141182200-141182800	Enhancers	Brain Hippocampus Middle	brain
19	chr3:141182200-141183000	Flanking Active TSS	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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