Variant report

Variant	rs16851839
Chromosome Location	chr1:165826306-165826307
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:165795539..165799937-chr1:165823038..165829386,11	MCF-7	breast:
2	chr1:165818712..165822734-chr1:165823086..165826851,4	MCF-7	breast:
3	chr1:165824047..165827978-chr1:165829041..165832736,3	K562	blood:
4	chr1:165796460..165798954-chr1:165824565..165827168,2	K562	blood:
5	chr1:165806407..165808791-chr1:165825833..165828310,2	MCF-7	breast:
6	chr1:165822136..165824706-chr1:165825180..165827276,2	K562	blood:
7	chr1:165825199..165827895-chr1:165834221..165836941,2	K562	blood:

Variant related genes	Relation type
ENSG00000143179	Chromatin interaction
ENSG00000143183	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs872178	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs946542	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2756102	chr1:165652342-165877342	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	esv2830094	chr1:165785503-165840411	Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	31 gene(s)	inside rSNPs	diseases
3	esv2755529	chr1:165813862-165858354	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv437246	chr1:165822891-165860813	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165818000-165829200	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr1:165818600-165828000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr1:165818800-165826600	Weak transcription	Esophagus	oesophagus
4	chr1:165820400-165827600	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr1:165820800-165828000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr1:165821000-165832200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr1:165821400-165827200	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr1:165821800-165827800	Enhancers	NHLF	lung
9	chr1:165821800-165828000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr1:165821800-165829400	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr1:165822000-165828200	Enhancers	NHDF-Ad	bronchial
12	chr1:165822200-165827400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr1:165822200-165827600	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr1:165823200-165827200	Enhancers	Primary hematopoietic stem cells	blood
15	chr1:165823600-165826400	Weak transcription	Brain Angular Gyrus	brain
16	chr1:165823600-165828200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr1:165823600-165831200	Weak transcription	Primary B cells from peripheral blood	blood
18	chr1:165823600-165833000	Weak transcription	Hela-S3	cervix
19	chr1:165823600-165834000	Weak transcription	Aorta	Aorta
20	chr1:165823600-165834600	Weak transcription	Fetal Stomach	stomach
21	chr1:165823800-165826400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr1:165823800-165826400	Weak transcription	Gastric	stomach
23	chr1:165823800-165826400	Weak transcription	Right Ventricle	heart
24	chr1:165823800-165826400	Weak transcription	Small Intestine	intestine
25	chr1:165823800-165826400	Enhancers	Dnd41	blood
26	chr1:165823800-165826600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr1:165823800-165826600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr1:165823800-165826600	Weak transcription	Lung	lung
29	chr1:165823800-165826600	Weak transcription	Right Atrium	heart
30	chr1:165823800-165826600	Enhancers	HSMM	muscle
31	chr1:165823800-165827000	Enhancers	Osteobl	bone
32	chr1:165823800-165829200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr1:165823800-165829400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr1:165823800-165838000	Weak transcription	Fetal Lung	lung
35	chr1:165823800-165840200	Weak transcription	HUVEC	blood vessel
36	chr1:165824400-165826600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr1:165824600-165826600	Enhancers	Rectal Mucosa Donor 31	rectum
38	chr1:165824600-165828400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr1:165824800-165826800	Enhancers	K562	blood
40	chr1:165824800-165827600	Enhancers	Duodenum Mucosa	Duodenum
41	chr1:165824800-165828000	Enhancers	Primary hematopoietic stem cells short term culture	blood
42	chr1:165824800-165828200	Enhancers	Psoas Muscle	Psoas
43	chr1:165824800-165829200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr1:165824800-165829400	Enhancers	Fetal Thymus	thymus
45	chr1:165824800-165830000	Enhancers	Sigmoid Colon	Sigmoid Colon
46	chr1:165825000-165829000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr1:165825000-165829000	Enhancers	Fetal Intestine Small	intestine
48	chr1:165825000-165829400	Enhancers	Thymus	Thymus
49	chr1:165825000-165829800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr1:165825200-165826400	Weak transcription	H9 Cell Line	embryonic stem cell

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