Variant report

Variant	rs872178
Chromosome Location	chr1:165825989-165825990
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:165795539..165799937-chr1:165823038..165829386,11	MCF-7	breast:
2	chr1:165818712..165822734-chr1:165823086..165826851,4	MCF-7	breast:
3	chr1:165824047..165827978-chr1:165829041..165832736,3	K562	blood:
4	chr1:165796460..165798954-chr1:165824565..165827168,2	K562	blood:
5	chr1:165806407..165808791-chr1:165825833..165828310,2	MCF-7	breast:
6	chr1:165822136..165824706-chr1:165825180..165827276,2	K562	blood:
7	chr1:165825199..165827895-chr1:165834221..165836941,2	K562	blood:

Variant related genes	Relation type
ENSG00000143183	Chromatin interaction
ENSG00000143179	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs16851839	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs946542	1.00[CEU][hapmap];1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2756102	chr1:165652342-165877342	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	esv2830094	chr1:165785503-165840411	Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	31 gene(s)	inside rSNPs	diseases
3	esv2755529	chr1:165813862-165858354	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv437246	chr1:165822891-165860813	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165818000-165829200	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr1:165818600-165828000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr1:165818800-165826600	Weak transcription	Esophagus	oesophagus
4	chr1:165819000-165826000	Weak transcription	Brain Hippocampus Middle	brain
5	chr1:165819000-165826200	Weak transcription	Stomach Mucosa	stomach
6	chr1:165820400-165827600	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr1:165820800-165828000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr1:165821000-165832200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr1:165821400-165827200	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr1:165821600-165826200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr1:165821800-165826000	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr1:165821800-165827800	Enhancers	NHLF	lung
13	chr1:165821800-165828000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr1:165821800-165829400	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr1:165822000-165828200	Enhancers	NHDF-Ad	bronchial
16	chr1:165822200-165826200	Enhancers	Muscle Satellite Cultured Cells	--
17	chr1:165822200-165827400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr1:165822200-165827600	Enhancers	HUES6 Cell Line	embryonic stem cell
19	chr1:165822400-165826200	Enhancers	Skeletal Muscle Male	skeletal muscle
20	chr1:165822800-165826200	Enhancers	Skeletal Muscle Female	skeletal muscle
21	chr1:165823200-165827200	Enhancers	Primary hematopoietic stem cells	blood
22	chr1:165823600-165826000	Weak transcription	Liver	Liver
23	chr1:165823600-165826400	Weak transcription	Brain Angular Gyrus	brain
24	chr1:165823600-165828200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr1:165823600-165831200	Weak transcription	Primary B cells from peripheral blood	blood
26	chr1:165823600-165833000	Weak transcription	Hela-S3	cervix
27	chr1:165823600-165834000	Weak transcription	Aorta	Aorta
28	chr1:165823600-165834600	Weak transcription	Fetal Stomach	stomach
29	chr1:165823800-165826000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr1:165823800-165826000	Weak transcription	NH-A	brain
31	chr1:165823800-165826200	Weak transcription	Placenta Amnion	Placenta Amnion
32	chr1:165823800-165826200	Enhancers	HSMMtube	muscle
33	chr1:165823800-165826400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr1:165823800-165826400	Weak transcription	Gastric	stomach
35	chr1:165823800-165826400	Weak transcription	Right Ventricle	heart
36	chr1:165823800-165826400	Weak transcription	Small Intestine	intestine
37	chr1:165823800-165826400	Enhancers	Dnd41	blood
38	chr1:165823800-165826600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
39	chr1:165823800-165826600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
40	chr1:165823800-165826600	Weak transcription	Lung	lung
41	chr1:165823800-165826600	Weak transcription	Right Atrium	heart
42	chr1:165823800-165826600	Enhancers	HSMM	muscle
43	chr1:165823800-165827000	Enhancers	Osteobl	bone
44	chr1:165823800-165829200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr1:165823800-165829400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr1:165823800-165838000	Weak transcription	Fetal Lung	lung
47	chr1:165823800-165840200	Weak transcription	HUVEC	blood vessel
48	chr1:165824400-165826000	Weak transcription	HMEC	breast
49	chr1:165824400-165826600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr1:165824600-165826200	Enhancers	HepG2	liver

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