Variant report

Variant	rs16852568
Chromosome Location	chr2:167583233-167583234
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10497294	0.86[EUR][1000 genomes]
rs11892264	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16852465	0.86[EUR][1000 genomes]
rs16852639	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16852645	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2390481	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58436515	0.86[EUR][1000 genomes]
rs59641048	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6721669	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6722011	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73970027	0.84[EUR][1000 genomes]
rs73970079	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs993988	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529384	chr2:167143465-167958752	Enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv875375	chr2:167515013-167703912	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv583588	chr2:167557904-167589745	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:167582200-167583800	Enhancers	HepG2	liver
2	chr2:167582800-167584400	Enhancers	Primary B cells from cord blood	blood
3	chr2:167583000-167583600	Enhancers	GM12878-XiMat	blood
4	chr2:167583000-167584000	Enhancers	Primary hematopoietic stem cells	blood
5	chr2:167583000-167584400	Enhancers	Primary B cells from peripheral blood	blood
6	chr2:167583000-167584600	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr2:167583200-167583600	Enhancers	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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