Variant report

Variant	rs16852639
Chromosome Location	chr2:167635945-167635946
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10497294	0.83[EUR][1000 genomes]
rs11892264	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16852465	0.83[EUR][1000 genomes]
rs16852568	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16852645	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2390481	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs58436515	0.83[EUR][1000 genomes]
rs59641048	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6721669	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6722011	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73020319	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73970079	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs993988	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529384	chr2:167143465-167958752	Enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv875375	chr2:167515013-167703912	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:167631000-167640800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr2:167631200-167638600	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr2:167632600-167638600	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr2:167632800-167640600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr2:167633000-167638400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr2:167633000-167638800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr2:167633000-167640000	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr2:167635200-167636600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr2:167635800-167636600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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