Variant report

Variant	rs16853013
Chromosome Location	chr2:167997180-167997181
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs16852887	1.00[AMR][1000 genomes]
rs16853002	1.00[AMR][1000 genomes]
rs16853039	1.00[MKK][hapmap];1.00[AMR][1000 genomes]
rs16853081	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16853172	1.00[ASW][hapmap];1.00[MKK][hapmap];1.00[AMR][1000 genomes]
rs1904440	1.00[CHB][hapmap]
rs57366202	1.00[AMR][1000 genomes]
rs57996548	1.00[AMR][1000 genomes]
rs59742705	1.00[AMR][1000 genomes]
rs60461467	1.00[AMR][1000 genomes]
rs7588159	1.00[MKK][hapmap];0.87[YRI][hapmap];1.00[AMR][1000 genomes]
rs7591107	1.00[MKK][hapmap];0.87[YRI][hapmap];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875376	chr2:167844513-168037489	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:167989200-167998600	Weak transcription	Left Ventricle	heart
2	chr2:167992200-167999800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr2:167992600-167997200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr2:167993600-167997200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr2:167993800-167999800	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr2:167995000-167999400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr2:167995000-167999600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr2:167996200-167998200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr2:167996200-167998400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr2:167996200-167998600	Enhancers	HMEC	breast
11	chr2:167996200-168001400	Enhancers	Fetal Heart	heart
12	chr2:167996200-168001400	Enhancers	Skeletal Muscle Female	skeletal muscle
13	chr2:167996600-167997400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr2:167996600-167997400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr2:167996600-167998200	Enhancers	HSMM	muscle
16	chr2:167996600-167998200	Enhancers	NHEK	skin
17	chr2:167996800-167997200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr2:167996800-167997200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr2:167996800-167997200	Enhancers	Stomach Smooth Muscle	stomach
20	chr2:167996800-167997200	Enhancers	HSMMtube	muscle
21	chr2:167996800-167997400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr2:167996800-167997400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
23	chr2:167996800-167997400	Enhancers	HUVEC	blood vessel
24	chr2:167996800-167997400	Enhancers	NHLF	lung
25	chr2:167996800-167997600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr2:167996800-167997600	Enhancers	Cortex derived primary cultured neurospheres	brain
27	chr2:167996800-167998000	Enhancers	NH-A	brain
28	chr2:167996800-167998000	Enhancers	NHDF-Ad	bronchial
29	chr2:167996800-167998200	Enhancers	Muscle Satellite Cultured Cells	--
30	chr2:167996800-167998200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr2:167996800-167998200	Enhancers	Osteobl	bone
32	chr2:167997000-167997200	Enhancers	ES-I3 Cell Line	embryonic stem cell
33	chr2:167997000-167997200	Enhancers	Psoas Muscle	Psoas
34	chr2:167997000-167997200	Enhancers	Right Ventricle	heart
35	chr2:167997000-167998000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr2:167997000-167998200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr2:167997000-167999200	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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