Variant report

Variant	rs16853039
Chromosome Location	chr2:168002507-168002508
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs16852887	1.00[AMR][1000 genomes]
rs16853002	1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16853013	1.00[MKK][hapmap];1.00[AMR][1000 genomes]
rs16853081	1.00[AMR][1000 genomes]
rs16853172	1.00[ASW][hapmap];0.95[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57366202	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57996548	1.00[AMR][1000 genomes]
rs59742705	1.00[AMR][1000 genomes]
rs60461467	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7566346	0.82[YRI][hapmap]
rs7574738	1.00[ASW][hapmap];0.82[YRI][hapmap]
rs7588159	1.00[ASW][hapmap];1.00[MKK][hapmap];1.00[AMR][1000 genomes]
rs7591107	1.00[ASW][hapmap];1.00[MKK][hapmap];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875376	chr2:167844513-168037489	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:168000200-168005400	Weak transcription	Primary hematopoietic stem cells	blood
2	chr2:168000200-168009600	Weak transcription	Psoas Muscle	Psoas
3	chr2:168000600-168003200	Weak transcription	HSMM	muscle
4	chr2:168001000-168008600	Weak transcription	NHLF	lung
5	chr2:168001600-168005400	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr2:168002200-168005400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr2:168002400-168003200	Weak transcription	Fetal Intestine Large	intestine
8	chr2:168002400-168003200	Weak transcription	Fetal Intestine Small	intestine
9	chr2:168002400-168005200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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