Variant report

Variant	rs16853054
Chromosome Location	chr2:168005369-168005370
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10497319	1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12612401	1.00[EUR][1000 genomes]
rs12613172	1.00[EUR][1000 genomes]
rs12619545	1.00[EUR][1000 genomes]
rs12620446	1.00[EUR][1000 genomes]
rs12621191	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12622080	1.00[EUR][1000 genomes]
rs16853041	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16853083	1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16853193	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs16853357	1.00[AFR][1000 genomes]
rs28562247	1.00[EUR][1000 genomes]
rs4613243	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57654594	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57732129	1.00[EUR][1000 genomes]
rs58783083	1.00[EUR][1000 genomes]
rs59091135	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59955159	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60956823	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875376	chr2:167844513-168037489	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:168000200-168005400	Weak transcription	Primary hematopoietic stem cells	blood
2	chr2:168000200-168009600	Weak transcription	Psoas Muscle	Psoas
3	chr2:168001000-168008600	Weak transcription	NHLF	lung
4	chr2:168001600-168005400	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr2:168002200-168005400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr2:168005200-168005400	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links