Variant report

Variant	rs16853083
Chromosome Location	chr2:168008607-168008608
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10497319	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12612401	0.82[CHB][hapmap];1.00[EUR][1000 genomes]
rs12613172	0.82[CHB][hapmap];1.00[EUR][1000 genomes]
rs12619545	1.00[EUR][1000 genomes]
rs12620446	1.00[EUR][1000 genomes]
rs12621191	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12622080	1.00[EUR][1000 genomes]
rs16853041	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16853054	1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16853193	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs16853357	1.00[AFR][1000 genomes]
rs28562247	1.00[EUR][1000 genomes]
rs4613243	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57654594	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57732129	1.00[EUR][1000 genomes]
rs58783083	1.00[EUR][1000 genomes]
rs59091135	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59955159	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60956823	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875376	chr2:167844513-168037489	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:168000200-168009600	Weak transcription	Psoas Muscle	Psoas
2	chr2:168008600-168009000	Enhancers	NHLF	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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