Variant report

Variant	rs16853061
Chromosome Location	chr2:168005907-168005908
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10497310	0.88[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12105909	0.81[EUR][1000 genomes]
rs16853051	0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs16853128	1.00[CEU][hapmap];0.86[YRI][hapmap];0.81[EUR][1000 genomes]
rs16853166	1.00[CEU][hapmap];0.82[YRI][hapmap]
rs16853185	1.00[CEU][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs61661888	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6432984	0.88[CEU][hapmap];0.81[EUR][1000 genomes]
rs73025703	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73029709	0.83[EUR][1000 genomes]
rs73029712	0.81[EUR][1000 genomes]
rs73970886	0.81[EUR][1000 genomes]
rs7607357	0.91[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875376	chr2:167844513-168037489	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:168000200-168009600	Weak transcription	Psoas Muscle	Psoas
2	chr2:168001000-168008600	Weak transcription	NHLF	lung
3	chr2:168005400-168006200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr2:168005800-168006000	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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