Variant report

Variant	rs16853296
Chromosome Location	chr2:168094910-168094911
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:168089396..168091403-chr2:168092947..168095096,2	K562	blood:

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs1048981	0.84[CEU][hapmap]
rs1048982	0.85[EUR][1000 genomes]
rs10497321	1.00[CEU][hapmap];0.84[CHB][hapmap];0.88[EUR][1000 genomes]
rs1479587	0.84[EUR][1000 genomes]
rs1479591	0.83[EUR][1000 genomes]
rs16822928	0.88[EUR][1000 genomes]
rs16853227	1.00[CEU][hapmap];0.84[CHB][hapmap];0.86[EUR][1000 genomes]
rs16853266	0.88[EUR][1000 genomes]
rs16853267	0.88[EUR][1000 genomes]
rs16853279	0.88[EUR][1000 genomes]
rs16853282	1.00[CEU][hapmap];0.84[CHB][hapmap];0.88[EUR][1000 genomes]
rs16853284	0.88[EUR][1000 genomes]
rs16853285	1.00[CEU][hapmap];0.84[CHB][hapmap];0.88[EUR][1000 genomes]
rs16853286	0.88[EUR][1000 genomes]
rs16853288	0.88[EUR][1000 genomes]
rs16853290	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16853291	1.00[CEU][hapmap];0.84[CHB][hapmap];0.84[YRI][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16853305	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16853306	0.91[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs16853309	1.00[CEU][hapmap];0.84[CHB][hapmap];0.83[YRI][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16853328	0.91[CEU][hapmap];0.84[CHB][hapmap];0.88[EUR][1000 genomes]
rs16853330	0.92[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs16853331	1.00[CEU][hapmap];0.84[CHB][hapmap];0.83[YRI][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16853337	1.00[CEU][hapmap];0.84[CHB][hapmap];0.86[EUR][1000 genomes]
rs16853344	1.00[CEU][hapmap];0.84[CHB][hapmap];0.84[EUR][1000 genomes]
rs16853346	0.82[EUR][1000 genomes]
rs16853348	0.84[EUR][1000 genomes]
rs16853353	0.84[EUR][1000 genomes]
rs16853360	0.84[EUR][1000 genomes]
rs3749004	1.00[CEU][hapmap];0.84[CHB][hapmap];0.83[YRI][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3749006	0.91[CEU][hapmap];0.82[EUR][1000 genomes]
rs59889092	0.88[EUR][1000 genomes]
rs60214239	0.86[EUR][1000 genomes]
rs61748715	0.88[EUR][1000 genomes]
rs61750760	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6432987	1.00[CEU][hapmap];0.84[CHB][hapmap];0.88[EUR][1000 genomes]
rs6432988	0.88[EUR][1000 genomes]
rs6715974	0.83[EUR][1000 genomes]
rs6716354	0.83[EUR][1000 genomes]
rs6728044	0.84[EUR][1000 genomes]
rs6731860	0.85[EUR][1000 genomes]
rs6735992	0.85[EUR][1000 genomes]
rs6739872	0.88[EUR][1000 genomes]
rs6744215	0.83[EUR][1000 genomes]
rs6746887	0.82[EUR][1000 genomes]
rs6747157	0.83[EUR][1000 genomes]
rs6747227	1.00[CEU][hapmap];0.84[CHB][hapmap]
rs6749022	0.83[EUR][1000 genomes]
rs6749144	0.83[EUR][1000 genomes]
rs6759681	1.00[CEU][hapmap];0.84[CHB][hapmap];0.88[EUR][1000 genomes]
rs73012072	0.83[EUR][1000 genomes]
rs73029738	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73029753	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73970900	0.86[EUR][1000 genomes]
rs73972208	0.88[EUR][1000 genomes]
rs73972212	0.88[EUR][1000 genomes]
rs73972213	0.88[EUR][1000 genomes]
rs73972215	0.88[EUR][1000 genomes]
rs73972216	0.88[EUR][1000 genomes]
rs73972217	0.88[EUR][1000 genomes]
rs73972224	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7573953	0.91[CEU][hapmap];0.86[EUR][1000 genomes]
rs7575951	0.88[EUR][1000 genomes]
rs7576938	1.00[CEU][hapmap];0.84[CHB][hapmap];0.88[EUR][1000 genomes]
rs7578175	0.83[EUR][1000 genomes]
rs7580183	1.00[CEU][hapmap];0.84[CHB][hapmap];0.88[EUR][1000 genomes]
rs7581012	1.00[CEU][hapmap];0.84[CHB][hapmap];0.84[YRI][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7581190	1.00[CEU][hapmap];0.84[CHB][hapmap];0.88[EUR][1000 genomes]
rs7600424	1.00[CEU][hapmap];0.84[CHB][hapmap];0.88[EUR][1000 genomes]
rs7601984	0.88[EUR][1000 genomes]
rs7602109	0.92[CEU][hapmap];0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7602259	0.92[CEU][hapmap];0.82[CHB][hapmap];0.88[EUR][1000 genomes]
rs7603405	0.88[EUR][1000 genomes]
rs7604377	0.83[EUR][1000 genomes]
rs7607246	1.00[CEU][hapmap];0.84[CHB][hapmap];0.88[EUR][1000 genomes]
rs922536	1.00[CEU][hapmap];0.84[CHB][hapmap];0.88[EUR][1000 genomes]
rs922537	1.00[CEU][hapmap];0.84[CHB][hapmap];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv583591	chr2:168037489-168132892	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv875377	chr2:168084857-168203116	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	nsv979347	chr2:168092753-168141678	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:168056800-168114000	Weak transcription	Psoas Muscle	Psoas
2	chr2:168067400-168096000	Weak transcription	Left Ventricle	heart
3	chr2:168083800-168095800	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr2:168085000-168098600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr2:168085200-168097000	Weak transcription	Skeletal Muscle Female	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links