Variant report

Variant	rs60214239
Chromosome Location	chr2:168078983-168078984
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 88 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:87)

rs_ID	r²[population]
rs1048982	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10497321	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10930265	0.81[EUR][1000 genomes]
rs12105767	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1357599	0.81[EUR][1000 genomes]
rs1403894	0.81[EUR][1000 genomes]
rs1479587	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1479591	0.89[EUR][1000 genomes]
rs16822928	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs16853227	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs16853266	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs16853267	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs16853279	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs16853282	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs16853284	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs16853285	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs16853286	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs16853288	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs16853290	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs16853291	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs16853296	0.86[EUR][1000 genomes]
rs16853305	0.86[EUR][1000 genomes]
rs16853306	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16853309	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs16853328	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs16853330	0.89[EUR][1000 genomes]
rs16853331	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs16853337	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs16853344	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs16853346	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16853348	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs16853353	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs16853360	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs16853370	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3749004	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3749006	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4538166	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs57797869	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs58013803	0.81[EUR][1000 genomes]
rs59889092	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs60102532	0.81[EUR][1000 genomes]
rs61529696	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61748715	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61750760	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6432987	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6432988	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6715974	0.89[EUR][1000 genomes]
rs6716354	0.89[EUR][1000 genomes]
rs6728044	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6731860	0.87[EUR][1000 genomes]
rs6735992	0.87[EUR][1000 genomes]
rs6739872	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6744215	0.89[EUR][1000 genomes]
rs6746887	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6747157	0.89[EUR][1000 genomes]
rs6749022	0.89[EUR][1000 genomes]
rs6749144	0.89[EUR][1000 genomes]
rs6759681	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73012072	0.89[EUR][1000 genomes]
rs73029738	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73029753	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73970900	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73972208	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73972212	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73972213	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73972215	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73972216	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73972217	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73972224	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73972228	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73972230	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7573953	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7575951	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7576938	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7578175	0.89[EUR][1000 genomes]
rs7580183	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7581012	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7581190	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7600424	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7601984	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7602109	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7602259	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7603405	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7604377	0.89[EUR][1000 genomes]
rs7607246	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs922536	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs922537	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv583591	chr2:168037489-168132892	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:168056800-168114000	Weak transcription	Psoas Muscle	Psoas
2	chr2:168067400-168096000	Weak transcription	Left Ventricle	heart
3	chr2:168068600-168079000	Weak transcription	Fetal Muscle Leg	muscle
4	chr2:168077200-168082000	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr2:168077200-168084600	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr2:168078600-168079800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr2:168078800-168079200	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr2:168078800-168079800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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