Variant report

Variant	rs16853428
Chromosome Location	chr3:143047299-143047300
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:143047197..143050151-chr3:143065282..143067644,2	K562	blood:
2	chr3:143039326..143043088-chr3:143044192..143047844,4	K562	blood:
3	chr3:143046217..143048916-chr3:143050759..143052463,2	K562	blood:
4	chr3:143043771..143046677-chr3:143047093..143049794,2	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10446325	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs10804689	0.83[CHB][hapmap];0.94[JPT][hapmap];0.91[ASN][1000 genomes]
rs10804690	0.83[CHB][hapmap];0.94[JPT][hapmap];0.94[ASN][1000 genomes]
rs10804691	0.91[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10935488	0.92[CHB][hapmap];0.94[JPT][hapmap];0.97[ASN][1000 genomes]
rs10935489	0.92[CHB][hapmap];0.94[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11915857	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.96[TSI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12493355	0.92[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12633063	0.83[CHB][hapmap];0.85[CHD][hapmap];0.80[ASN][1000 genomes]
rs13066661	0.83[CHB][hapmap];0.80[ASN][1000 genomes]
rs13067348	0.83[CHB][hapmap];0.80[ASN][1000 genomes]
rs1393071	0.92[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs1501628	0.83[CHB][hapmap];0.94[JPT][hapmap];0.92[ASN][1000 genomes]
rs1501629	0.83[CHB][hapmap];0.97[CHD][hapmap];0.94[JPT][hapmap];0.93[ASN][1000 genomes]
rs1550547	0.92[CHB][hapmap];0.97[CHD][hapmap];0.94[JPT][hapmap];0.93[ASN][1000 genomes]
rs16853431	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1837784	0.83[CHB][hapmap];0.94[JPT][hapmap];0.93[ASN][1000 genomes]
rs2165518	0.83[CHB][hapmap];0.94[CHD][hapmap];0.94[JPT][hapmap];0.93[ASN][1000 genomes]
rs2352725	0.83[CHB][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes]
rs2883015	0.83[CHB][hapmap];1.00[CHD][hapmap];0.94[JPT][hapmap];0.94[ASN][1000 genomes]
rs6440163	0.91[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6440164	0.83[CHB][hapmap];1.00[CHD][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes]
rs6768217	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6769555	0.83[CHB][hapmap];0.94[CHD][hapmap];0.94[JPT][hapmap];0.93[ASN][1000 genomes]
rs6806677	0.83[CHB][hapmap];0.94[JPT][hapmap];0.93[ASN][1000 genomes]
rs729509	0.94[ASN][1000 genomes]
rs729511	1.00[CHD][hapmap];0.94[JPT][hapmap];0.94[ASN][1000 genomes]
rs7632299	0.92[CHB][hapmap];0.97[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7652901	0.81[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9332458	0.92[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs963885	0.83[CHB][hapmap];0.85[CHD][hapmap];0.80[ASN][1000 genomes]
rs968586	0.83[CHB][hapmap];0.91[CHD][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes]
rs968587	0.97[CHD][hapmap];0.89[JPT][hapmap];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949288	chr3:142793323-143585882	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	esv2757894	chr3:142992697-143285979	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv2759184	chr3:142992697-143285979	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:143022400-143048200	Weak transcription	Psoas Muscle	Psoas
2	chr3:143026600-143047400	Weak transcription	Spleen	Spleen
3	chr3:143033800-143048400	Weak transcription	Fetal Stomach	stomach
4	chr3:143034400-143047400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr3:143034400-143048600	Weak transcription	Brain Cingulate Gyrus	brain
6	chr3:143043400-143048400	Weak transcription	Lung	lung
7	chr3:143044800-143047400	Weak transcription	K562	blood
8	chr3:143045600-143047600	Weak transcription	Fetal Thymus	thymus
9	chr3:143045600-143050600	Enhancers	Fetal Lung	lung
10	chr3:143046600-143048600	Weak transcription	Adipose Nuclei	Adipose
11	chr3:143046600-143048600	Weak transcription	Brain Anterior Caudate	brain
12	chr3:143046600-143050000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr3:143046600-143050400	Enhancers	Fetal Kidney	kidney
14	chr3:143046600-143051800	Weak transcription	Dnd41	blood
15	chr3:143046600-143056200	Weak transcription	Primary T cells from cord blood	blood
16	chr3:143046800-143048800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr3:143047200-143047800	Weak transcription	Fetal Brain Male	brain
18	chr3:143047200-143048200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
19	chr3:143047200-143050800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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