Variant report

Variant	rs7652901
Chromosome Location	chr3:143064866-143064867
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:143057632..143059854-chr3:143064608..143066559,2	K562	blood:
2	chr3:143054747..143057331-chr3:143064098..143066734,2	K562	blood:
3	chr3:142838518..142840970-chr3:143064617..143066302,2	K562	blood:
4	chr3:143063232..143067878-chr3:143069249..143072270,4	K562	blood:
5	chr3:143064715..143066302-chr3:143076677..143078455,2	K562	blood:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10446325	0.84[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs10804689	0.82[CHB][hapmap];0.94[JPT][hapmap];0.92[ASN][1000 genomes]
rs10804690	0.82[CHB][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes]
rs10804691	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10935488	0.94[JPT][hapmap];0.92[ASN][1000 genomes]
rs10935489	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11915857	0.81[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12493355	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12633063	0.82[JPT][hapmap]
rs13066661	0.83[JPT][hapmap]
rs13067348	0.82[JPT][hapmap]
rs1393071	0.85[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1501628	0.82[CHB][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes]
rs1501629	0.81[CHB][hapmap];0.94[JPT][hapmap];0.96[ASN][1000 genomes]
rs1550547	0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs16853428	0.81[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16853431	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17638168	0.83[CEU][hapmap]
rs1837784	0.82[CHB][hapmap];0.94[JPT][hapmap];0.96[ASN][1000 genomes]
rs2165518	0.81[CHB][hapmap];0.94[JPT][hapmap];0.96[ASN][1000 genomes]
rs2352725	0.82[CHB][hapmap];0.94[JPT][hapmap];0.94[ASN][1000 genomes]
rs2883015	0.81[CHB][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes]
rs6440163	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6440164	0.81[CHB][hapmap];0.94[JPT][hapmap];0.94[ASN][1000 genomes]
rs6768217	0.82[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6769555	0.81[CHB][hapmap];0.94[JPT][hapmap];0.96[ASN][1000 genomes]
rs6806677	0.82[CHB][hapmap];0.94[JPT][hapmap];0.96[ASN][1000 genomes]
rs729509	0.95[ASN][1000 genomes]
rs729511	0.81[CHB][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes]
rs7632299	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9332458	0.84[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs968586	0.81[CHB][hapmap];0.94[JPT][hapmap];0.94[ASN][1000 genomes]
rs968587	0.88[JPT][hapmap];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949288	chr3:142793323-143585882	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	esv2757894	chr3:142992697-143285979	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv2759184	chr3:142992697-143285979	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv877564	chr3:143059952-143116883	Strong transcription Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:143061800-143066800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr3:143062400-143065800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr3:143062400-143066400	Weak transcription	Fetal Thymus	thymus
4	chr3:143063200-143066400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr3:143063600-143076400	Weak transcription	Brain Anterior Caudate	brain
6	chr3:143064000-143065000	Enhancers	HUVEC	blood vessel
7	chr3:143064000-143067000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr3:143064000-143067200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr3:143064200-143067000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr3:143064400-143065800	Weak transcription	Primary T cells from cord blood	blood
11	chr3:143064400-143066600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr3:143064400-143067400	Weak transcription	K562	blood
13	chr3:143064400-143068400	Enhancers	Dnd41	blood
14	chr3:143064600-143066000	Weak transcription	Primary T helper cells PMA-I stimulated	--
15	chr3:143064600-143070800	Weak transcription	Ovary	ovary

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