Variant report

Variant	rs16858007
Chromosome Location	chr3:145907640-145907641
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:145874654..145883964-chr3:145902489..145908084,13	MCF-7	breast:
2	chr3:145907272..145908250-chr3:146358720..146359373,2	MCF-7	breast:
3	chr3:145907332..145908011-chr3:146044703..146045227,2	K562	blood:

Variant related genes	Relation type
ENSG00000152952	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs3804658	0.85[ASN][1000 genomes]
rs7643850	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7653680	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877613	chr3:145833232-145912055	Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv1011146	chr3:145859022-145911429	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	nsv1012485	chr3:145861750-145947125	Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv536758	chr3:145861750-145947125	Flanking Active TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
5	nsv877614	chr3:145903426-146025896	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:145880800-145914400	Weak transcription	Left Ventricle	heart
2	chr3:145883000-145913000	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr3:145884800-145910800	Weak transcription	Liver	Liver
4	chr3:145885000-145908000	Weak transcription	Aorta	Aorta
5	chr3:145885600-145907800	Weak transcription	Ovary	ovary
6	chr3:145895800-145918200	Weak transcription	NHDF-Ad	bronchial
7	chr3:145896000-145907800	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr3:145896000-145910600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr3:145896400-145907800	Weak transcription	Adipose Nuclei	Adipose
10	chr3:145896400-145910800	Weak transcription	Fetal Lung	lung
11	chr3:145896600-145911200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr3:145897000-145933600	Weak transcription	Fetal Stomach	stomach
13	chr3:145899600-145917400	Weak transcription	Pancreas	Pancrea
14	chr3:145901000-145923800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr3:145902000-145912000	Weak transcription	Fetal Intestine Large	intestine
16	chr3:145902800-145908000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr3:145902800-145912400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr3:145902800-145923000	Weak transcription	Osteobl	bone
19	chr3:145902800-145923600	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr3:145903000-145934800	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr3:145903800-145911800	Weak transcription	Colon Smooth Muscle	Colon
22	chr3:145904000-145911800	Weak transcription	Fetal Heart	heart
23	chr3:145904800-145912600	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr3:145905000-145933600	Weak transcription	NHLF	lung
25	chr3:145906400-145914600	Weak transcription	Fetal Brain Male	brain
26	chr3:145907000-145938600	Weak transcription	Fetal Intestine Small	intestine
27	chr3:145907400-145907800	Enhancers	Pancreatic Islets	Pancreatic Islet
28	chr3:145907400-145910800	Weak transcription	Stomach Smooth Muscle	stomach
29	chr3:145907400-145912000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
30	chr3:145907400-145913000	Weak transcription	Skeletal Muscle Female	skeletal muscle
31	chr3:145907400-145914400	Weak transcription	Psoas Muscle	Psoas
32	chr3:145907400-145918200	Weak transcription	HepG2	liver
33	chr3:145907600-145907800	Enhancers	Fetal Kidney	kidney
34	chr3:145907600-145908200	Enhancers	A549	lung
35	chr3:145907600-145908800	Enhancers	HUVEC	blood vessel
36	chr3:145907600-145913200	Weak transcription	Rectal Smooth Muscle	rectum
37	chr3:145907600-145915000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
38	chr3:145907600-145939200	Weak transcription	Brain Anterior Caudate	brain

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