Variant report

Variant	rs16858292
Chromosome Location	chr4:45259896-45259897
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs16858155	1.00[AMR][1000 genomes]
rs16858167	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs238770	1.00[AMR][1000 genomes]
rs348502	1.00[AMR][1000 genomes]
rs348503	1.00[AMR][1000 genomes]
rs348504	1.00[AMR][1000 genomes]
rs348505	1.00[AMR][1000 genomes]
rs348506	1.00[AMR][1000 genomes]
rs348507	1.00[AMR][1000 genomes]
rs348508	1.00[AMR][1000 genomes]
rs348510	1.00[AMR][1000 genomes]
rs348511	1.00[AMR][1000 genomes]
rs348512	1.00[AMR][1000 genomes]
rs348513	1.00[AMR][1000 genomes]
rs348514	1.00[AMR][1000 genomes]
rs348515	1.00[AMR][1000 genomes]
rs348516	1.00[AMR][1000 genomes]
rs348517	1.00[AMR][1000 genomes]
rs348521	1.00[AMR][1000 genomes]
rs348526	1.00[AMR][1000 genomes]
rs348528	1.00[AMR][1000 genomes]
rs348530	1.00[AMR][1000 genomes]
rs987723	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv594104	chr4:45105210-45665828	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv461349	chr4:45175691-45265046	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv594105	chr4:45175691-45265046	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv878984	chr4:45191856-45321022	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv461351	chr4:45224500-45283866	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
6	nsv594106	chr4:45224500-45283866	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
7	nsv4322	chr4:45235596-45280072	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:45257200-45269800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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