Variant report

Variant	rs348521
Chromosome Location	chr4:45195979-45195980
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-GUF1-2	chr4:45195914-45196064	XLOC_003531

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs16858155	1.00[AMR][1000 genomes]
rs16858167	1.00[AMR][1000 genomes]
rs16858292	1.00[AMR][1000 genomes]
rs238770	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs348502	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs348503	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs348504	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs348505	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs348506	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs348507	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs348508	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs348510	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs348511	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs348512	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs348513	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs348514	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs348515	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs348516	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs348517	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs348526	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs348528	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs348530	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs987723	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531944	chr4:44299343-45200700	Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1014327	chr4:44735209-45218149	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv829919	chr4:45069901-45253808	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv594104	chr4:45105210-45665828	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv461349	chr4:45175691-45265046	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv594105	chr4:45175691-45265046	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv878984	chr4:45191856-45321022	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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