Variant report

Variant	rs16858313
Chromosome Location	chr3:146092845-146092846
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1512070	1.00[AFR][1000 genomes]
rs1512071	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16858303	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7617461	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7620716	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv536759	chr3:146087689-146123589	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv1011893	chr3:146090110-146125010	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:146090600-146093000	Enhancers	Fetal Lung	lung
2	chr3:146090800-146093200	Enhancers	Fetal Stomach	stomach
3	chr3:146091600-146093200	Enhancers	HSMMtube	muscle
4	chr3:146091600-146094800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr3:146091800-146093200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr3:146092000-146094000	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr3:146092400-146093000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr3:146092400-146093200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr3:146092600-146093000	Enhancers	Sigmoid Colon	Sigmoid Colon
10	chr3:146092600-146093200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr3:146092600-146093200	Enhancers	Ovary	ovary
12	chr3:146092800-146093000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr3:146092800-146093000	Enhancers	Osteobl	bone
14	chr3:146092800-146093200	Enhancers	Brain Germinal Matrix	brain
15	chr3:146092800-146093200	Enhancers	Left Ventricle	heart
16	chr3:146092800-146093200	Enhancers	Psoas Muscle	Psoas
17	chr3:146092800-146093200	Enhancers	NHDF-Ad	bronchial
18	chr3:146092800-146093400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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